- Transcript 'Haaura.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S1301.g08067.01.t
Possible name(s)
EED; LRWD1; WDR5B
Gene model
Location
S1301 [4,145 / 6,119]
Amino acid sequence
Length: 658
>Haaura.CG.MTP2014.S1301.g08067.01.p
MNSNEQLNLTISPRKRKLESEKDGEAERKANTRLLSEEKILNLTGYNNLNEVEELCLENC
NLTQHDLEPTLFNRMNSLSALDVSNNEIESIPLNIEMPELEILNISSNKLRSVEWLRCFP
NLLELDMRNNPYLPVVDYYKAVFMLKRIELIDNKGVKMKFDIQQVYTDKLRSKMEVIWKI
QYAGKLRKLINMQDRNIVVKEFANFCKKSVVYGPNSLREFRHWRIEDIAKEIAAESDNGT
EEKGKHQSSRNSLESDKKVITSKTIETSVTCAPHRFLQCHGNDSEDDRDFTQQVWCCKFH
PSMNNIVATCGGETVCVTDVITGTVKARFQQTNEEFYSLDWTIFKINSTCSTSILACGGC
LGFVHLIHYEQFCCYGYFKAHDKPIQTLSFVPNHSTYLLSAGNDFSIFLWDIGIPSFPDY
RYSRRKLAVFQNLNYNPLKLMMMQDKYLLCASEGGLFCWKLSLKLTDIKTKSPPHLFPAN
SKITFPCMEEEEFVDGLALIDDDVIATKCAQVGVIFLWRFSEVESKLSKSAESVTAPLAM
ELKWSNTPQCYMNITVCKKTKTLLAGDDKGQIWMYSLNRNIPKGGKSQVGLKPMLPEKTM
NPSALLPWPVCLRSNGTLLKDLDTGTVYNDICSSSCMDYVVVVADNNLVCIFKSARQ*
Nucleotide sequence
Length: 1,974
>Haaura.CG.MTP2014.S1301.g08067.01.t
ATGAATTCGAACGAGCAGCTTAACCTTACCATCTCACCTAGAAAACGGAAGCTCGAATCA
GAGAAGGACGGAGAAGCTGAACGCAAGGCCAATACTCGTCTCCTGTCTGAAGAAAAAATA
CTCAATCTTACCGGATATAATAACCTGAATGAAGTCGAGGAACTGTGTCTAGAAAATTGC
AACCTCACACAACACGATTTAGAGCCCACACTGTTCAATCGAATGAATTCTCTGTCTGCT
TTGGATGTTTCAAATAACGAAATAGAGAGTATACCATTGAATATAGAAATGCCTGAATTA
GAGATACTAAATATCTCTTCTAACAAGTTGAGATCTGTTGAGTGGCTGAGATGTTTTCCA
AACCTACTTGAGCTAGACATGCGGAACAATCCTTATTTACCTGTAGTGGATTATTACAAA
GCAGTCTTCATGCTCAAAAGGATTGAGCTCATTGACAACAAAGGGGTGAAAATGAAATTT
GATATTCAGCAAGTGTATACAGATAAGCTTAGATCAAAGATGGAAGTGATATGGAAAATA
CAATATGCGGGAAAACTACGAAAACTCATTAACATGCAAGACAGAAACATCGTCGTGAAG
GAATTTGCTAATTTCTGTAAAAAATCAGTTGTCTATGGCCCAAACTCTCTGAGGGAATTC
CGACATTGGAGAATTGAAGACATTGCTAAGGAAATCGCTGCTGAAAGTGATAATGGAACA
GAAGAAAAAGGAAAACACCAAAGCTCAAGAAATTCTCTCGAATCTGATAAAAAGGTCATC
ACGTCAAAGACCATTGAAACTTCCGTAACATGTGCTCCCCATCGCTTTTTACAATGCCAT
GGGAATGATAGTGAGGATGATCGAGATTTCACGCAGCAAGTTTGGTGCTGCAAATTTCAT
CCAAGCATGAATAACATTGTGGCAACCTGTGGTGGTGAAACAGTATGTGTCACTGATGTG
ATCACTGGTACAGTTAAAGCAAGGTTTCAGCAAACAAATGAAGAATTTTATAGTCTGGAC
TGGACAATCTTTAAAATAAATAGTACATGCTCAACCAGTATTCTGGCTTGTGGTGGTTGC
CTTGGTTTCGTTCATCTAATTCACTATGAACAGTTCTGTTGCTATGGTTATTTCAAAGCC
CACGACAAACCTATTCAAACGCTGAGCTTTGTTCCAAACCACTCTACGTATCTGCTGTCA
GCCGGCAATGATTTTTCGATTTTTCTATGGGACATTGGCATCCCGTCCTTCCCGGACTAT
CGTTATTCTCGCAGGAAACTGGCGGTCTTTCAGAATTTGAATTACAATCCACTGAAACTT
ATGATGATGCAGGATAAGTATTTATTGTGTGCTTCAGAAGGAGGTTTGTTCTGCTGGAAG
CTTTCACTTAAACTAACCGACATCAAAACTAAATCACCTCCCCATCTTTTCCCGGCGAAT
TCCAAAATAACATTTCCTTGCATGGAAGAAGAGGAATTTGTAGACGGACTCGCCCTAATT
GACGATGATGTGATAGCCACAAAATGTGCCCAAGTTGGTGTCATCTTTTTATGGAGATTC
AGTGAAGTCGAGAGCAAGCTGTCCAAGTCTGCTGAAAGTGTTACGGCACCACTTGCTATG
GAACTGAAATGGTCAAACACCCCTCAGTGCTACATGAATATCACTGTTTGCAAAAAGACA
AAAACCTTATTAGCTGGTGATGATAAAGGACAGATATGGATGTATTCATTGAATAGAAAT
ATTCCTAAGGGTGGAAAATCCCAAGTTGGTTTGAAGCCAATGCTACCTGAAAAAACTATG
AATCCTTCTGCATTGCTCCCTTGGCCAGTGTGCCTAAGATCGAATGGTACACTTTTGAAA
GATCTCGATACCGGTACAGTGTACAATGACATTTGTTCAAGTTCTTGTATGGACTATGTG
GTTGTTGTAGCTGACAATAATTTAGTTTGTATCTTCAAGTCAGCCCGACAATAA
| Gene3D |
LRR_dom_sf (IPR032675) - T[22-175] 3.1E-17 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[77-98] 7.643 - T[99-120] 7.265 |
| Pfam |
Leu-rich_rpt_4 (IPR025875) - T[98-132] 3.7E-6 |
| SMART |
WD40_repeat (IPR001680) - T[270-319] 2.1 - T[371-411] 1.7E-6 - T[615-653] 270.0 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[282-655] 1.2E-45 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[291-581] 2.75E-25 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[378-412] 12.514 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[378-420] 10.733 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[398-412] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRWD1_HUMAN | 29.027 % | 285 | 3.08E-87 |