Aniseed - Transcript Card

Transcript 'Haaura.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S1223.g07894.01.t

Possible name(s)

RPAIN

Gene model

Haaura.CG.MTP2014.S1223.g07894

Location

S1223 [10,330 / 10,999]

Sequences

Amino acid sequence

Length: 223

>Haaura.CG.MTP2014.S1223.g07894.01.p
MASFRNPDSATKHKNMYKLGSPPTWKDTYKRRCTDRLKSSRSKLLQKFRNITVETETKAI
DETDSSIVDDVMREEWKALQSEKGDLNFDSVLATLEEIKHELVLQEQEILLHYEKDRKHE
EEALHSAVSHHENQCQNQIICPICKSNYLEMKQNVIFCKCGLHVDTEQDCITLRHVDIQL
RVGSTSHLEKCPARPVFGVVDTFGTQNLLMSCNACDFMFIVI*

Nucleotide sequence

Length: 669

>Haaura.CG.MTP2014.S1223.g07894.01.t
ATGGCGAGTTTCCGAAATCCCGATTCAGCAACTAAACACAAGAACATGTATAAATTGGGA
TCGCCACCGACTTGGAAAGATACTTACAAACGACGCTGTACTGACAGATTAAAAAGTAGC
AGATCTAAACTACTTCAAAAATTCAGAAACATAACGGTGGAGACTGAAACAAAGGCTATT
GACGAAACAGATTCCAGCATCGTCGACGATGTTATGCGCGAAGAATGGAAGGCACTGCAG
AGCGAAAAAGGCGACTTGAATTTTGATTCTGTGCTCGCAACTCTAGAAGAAATTAAACAC
GAACTTGTGCTTCAGGAGCAAGAAATACTTTTGCATTACGAAAAAGACCGGAAGCATGAA
GAGGAAGCTTTACATAGCGCAGTATCACATCATGAGAATCAGTGTCAAAATCAGATCATT
TGTCCCATATGTAAATCAAACTATTTAGAGATGAAACAGAACGTAATATTTTGCAAGTGC
GGCCTGCATGTCGACACAGAACAGGATTGCATTACGTTGAGACACGTCGACATACAGCTG
CGAGTCGGAAGCACTTCTCATTTGGAAAAATGCCCTGCCAGACCGGTGTTTGGGGTCGTG
GACACATTTGGAACACAGAATTTGTTGATGTCCTGTAATGCTTGCGATTTTATGTTCATT
GTGATATGA

InterProScan

PANTHER	RIP (IPR028156) - T[7-222] 9.8E-56
Pfam	RPA_interact_N_dom (IPR028158) - T[13-50] 1.5E-13
Pfam	RPA_interact_central (IPR028155) - T[66-128] 2.4E-6
Pfam	RPA_interact_C_dom (IPR028159) - T[140-218] 1.0E-20

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RIP_HUMAN	33.188 %	125	9.89E-36