- Clone 'cien51549' >
- Transcript 'Harore.CG.MTP2014.S5...' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Haaura.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S1170.g07786.01.t
Possible name(s)
COL12A1; COL7A1; FNDC7
Gene model
Location
S1170 [13,821 / 22,220]
Amino acid sequence
Length: 913
>Haaura.CG.MTP2014.S1170.g07786.01.p
MISSVNITDKASTGFIIKWNAITGAESYNVTIFYTSNNSTVTSAMITIDYIKTTANVTGL
RTGEWYTLKIRALNQAGSGVAYQSVLTTALPTTSKPILEGVSVRSFQVTWQAMPGADGYI
ITLYKVGTLLVIPDSPQNLAIDYLLNNGIAVSWSSVISAEFYKVQVQHRVNNSLVQSSNS
SDNVTNTGTVIMGLTPGGLYRVEVSAVNEAVLPKTTAPIISDVGLRSFSVSWLAKIGSSG
YYVIVLLNNTEIQRNFFGENHAVIDDLDPGVLYNISIQVSYPGGLSEVSQSRSQITVPDK
PSNIEIIKLYEDGFDVMWSPVRGADFFQVQILKEKSALTNIEGDGNITSTSTRVSRLTPG
GIYEIRVKAYNNYVGAGPESSVSSSTVLPSTTRPVISSPSQNSFSVSWTQKNGATSYIFN
VLADSILLPTVEVQTTPYVFTNLQPGTLYNITVLVVYPGGRSPNSESSTQFTVPAEPTAS
FRGAAKYSFYFKWGLVTGASTYSYNCKHKESGSQVGSGTTAGNEIFITSLQIQTEYVCYV
RAGNEAGSSNEVSATVKTAQRDCESQPCQNGGTCTDLSEGYTCSCVLGFEGTYCEKGRSI
AAVQCTTNVFKLDGNLTYVTRFNDDTLIAVECDVEVQKVTQMVNFTDVSSAEVEETVEIL
QVLTSDANTLTMEETTNAAEFIVDVTSALKKNQLKVTPVILFEIVATTSHLSEAFGAPSD
PGPNPTGPSPAPSIGPPTTTLSPGAVRAQEDQLKQNLVMALSSLANEVTLSENSTELKVE
TESIIAQILERPTRSNSESENQQSDSVSFTPQIQPTNQEESVQPINITLPGGAIDFAGEA
AKREGAPLRITFFLHKDSSLFPSNQTVDKVVSAELAKGIVIRNLKEPIVIQHPGEKSKVE
KSPMNKTFVSCAC
Nucleotide sequence
Length: 3,400
>Haaura.CG.MTP2014.S1170.g07786.01.t
ATGCTTTCGTTACAAAGACAATCTACGTATTTCAAGCTAAGTTTACGGAGATTGGCTCAG
TACTCGATAGACAAAGAGCAGACCGTTCTTCCAGATGCTTGAGCCAGTAAGTCTTGTAAC
GTATCTCCCGCGGACTACTGTACTGGGGATCCAGTTAAAACATAAATGCCAAAAGAATGC
TCAAATACTGCTTTAGATTTGTGTCAAAATTGAAGACTAATACAATATCGAATTACATTC
GTTATTAGGATTTACGGGATCGTTCGCAAGCAATGAATCCAGTATTATACTATGGAATAC
AACTGATTCAAATTCAAGCAACAATACAGCGACTATCAGCGCCGACAATGGTACAACAGT
AGCAGCTATAGTAGGTAGGCATATATATGAAACTGTTCCTCAAACAAATGCAGAGACAAC
TCAGCCAGAGACCACCACATATGAAACTGTTCCTCTAACAAATGCAGAGACAACTCAGCT
AGAGACCACCACATATGAAACTGTTCCTCAAACAAATGCAACTCTGACAGAGACCACCAC
ATATGAAACTGTTCCTCAAACAAATGCAACTCTGACAGAGACCACCACATATGAAACTGT
TCCTCAAACAAATGCAACTACAACTCAATCTTATGATTTAACCACAATCACTTTGCCAGG
AATGATATCCAGTGTAAATATCACAGACAAAGCTTCAACTGGGTTCATAATAAAATGGAA
TGCCATCACAGGCGCTGAATCTTACAATGTTACAATTTTTTACACTTCAAACAACTCAAC
TGTCACATCCGCCATGATTACTATAGATTACATTAAAACAACTGCTAATGTAACTGGCCT
ACGGACTGGTGAATGGTATACACTGAAGATAAGGGCACTGAACCAAGCTGGCTCTGGTGT
AGCTTACCAATCAGTATTAACAACAGCATTGCCAACTACTTCGAAACCAATCTTGGAAGG
AGTCTCAGTTAGAAGCTTTCAAGTTACATGGCAAGCAATGCCAGGAGCAGATGGTTACAT
AATTACCCTGTACAAAGTCGGTACACTATTAGTAATTCCCGATAGTCCACAGAATCTTGC
GATAGATTATCTTCTCAACAATGGAATAGCTGTGAGCTGGTCTTCAGTCATCAGTGCAGA
ATTCTACAAAGTACAAGTGCAACACAGGGTCAACAACAGCTTGGTACAGAGCTCAAACAG
TTCAGACAATGTTACAAATACAGGCACAGTTATAATGGGATTGACTCCAGGTGGACTGTA
CAGGGTTGAGGTGTCTGCTGTGAATGAGGCTGTTCTCCCTAAAACGACAGCCCCAATCAT
TTCGGATGTTGGCCTCCGCTCTTTTTCGGTATCCTGGTTAGCCAAAATTGGATCATCTGG
ATATTATGTCATTGTATTATTGAATAACACCGAGATACAGAGAAATTTCTTCGGAGAGAA
TCATGCAGTGATTGATGATTTGGATCCGGGTGTGTTGTACAACATTTCCATCCAAGTTTC
TTATCCAGGAGGACTGAGTGAAGTTAGTCAATCTAGAAGTCAAATCACAGTTCCTGATAA
GCCAAGCAATATTGAAATCATAAAACTCTATGAAGACGGGTTTGATGTCATGTGGTCTCC
TGTCAGAGGTGCTGATTTTTTTCAAGTTCAAATATTGAAGGAAAAATCTGCGTTGACCAA
TATAGAGGGTGATGGAAACATAACATCTACCTCCACACGTGTATCTCGTTTAACACCAGG
TGGTATATATGAGATCAGAGTGAAAGCATATAACAATTATGTTGGTGCTGGACCCGAGTC
TTCAGTGTCATCTTCTACTGTTTTGCCATCAACCACCAGACCAGTTATATCAAGTCCTTC
CCAAAATTCATTCAGCGTTTCGTGGACACAAAAGAATGGAGCAACGTCGTACATATTTAA
TGTACTGGCCGATTCGATCCTTTTACCGACAGTCGAGGTGCAGACAACACCGTACGTTTT
TACTAATCTACAGCCTGGGACGCTTTACAACATCACTGTTTTGGTCGTGTACCCTGGTGG
GCGGAGCCCCAACTCTGAATCGAGCACCCAATTTACCGTTCCTGCTGAACCAACAGCTAG
CTTCCGTGGGGCTGCAAAATACAGCTTCTATTTCAAATGGGGTCTGGTCACGGGTGCATC
AACTTATTCTTACAACTGCAAGCATAAAGAAAGTGGATCCCAAGTCGGTAGCGGGACGAC
AGCCGGAAATGAAATCTTCATTACCTCGTTACAGATTCAGACAGAGTATGTATGTTATGT
TCGTGCTGGGAACGAGGCAGGCTCAAGTAATGAAGTCAGTGCAACAGTTAAAACAGCGCA
ACGCGATTGTGAATCCCAGCCATGTCAAAATGGGGGTACATGCACTGACCTCTCAGAAGG
ATACACTTGCTCCTGTGTTCTTGGATTCGAGGGTACCTATTGCGAAAAAGGACGCTCCAT
TGCTGCCGTACAATGCACCACAAATGTTTTCAAACTGGATGGGAACCTGACATATGTTAC
GAGATTTAATGATGACACTTTGATAGCGGTGGAGTGTGATGTCGAAGTTCAAAAAGTAAC
CCAGATGGTCAACTTCACTGATGTGTCTTCAGCAGAAGTTGAAGAAACAGTAGAAATATT
GCAAGTACTCACGTCGGATGCGAATACACTGACAATGGAAGAGACGACCAATGCTGCTGA
ATTCATAGTTGATGTCACTTCGGCCTTGAAAAAAAATCAACTAAAGGTGACTCCAGTAAT
CCTATTCGAAATAGTCGCCACAACAAGTCATCTGTCCGAGGCTTTTGGAGCACCATCCGA
CCCCGGTCCTAACCCAACAGGACCCTCTCCCGCTCCGAGTATTGGACCACCGACGACCAC
TTTGTCCCCGGGAGCTGTCCGCGCACAGGAAGACCAACTTAAGCAAAACTTGGTGATGGC
GTTATCGTCGCTGGCGAATGAGGTTACACTATCAGAAAATTCTACTGAACTAAAAGTAGA
GACGGAATCAATAATTGCACAGATACTGGAAAGACCTACGAGATCAAACAGCGAAAGCGA
GAATCAGCAATCGGATTCAGTGTCATTCACTCCTCAGATTCAACCCACGAACCAAGAAGA
ATCCGTACAGCCTATAAACATCACCTTACCTGGAGGAGCTATTGATTTTGCTGGAGAAGC
GGCCAAACGGGAGGGCGCCCCCCTCCGTATCACGTTCTTCCTTCACAAGGATTCTTCTTT
GTTTCCTTCAAATCAAACGGTTGATAAGGTTGTATCAGCCGAATTAGCTAAAGGAATAGT
GATTCGAAACCTCAAAGAACCAATCGTTATACAACACCCTGGGGAGAAAAGCAAAGTTGA
AAAATCTCCAATGAACAAAACTTTCGTAAGTTGTGCTTGC
| ProSiteProfiles |
FN3_dom (IPR003961) - T[1-92] 12.671 - T[214-299] 11.353 - T[300-389] 12.095 - T[390-476] 14.312 |
| SMART |
FN3_dom (IPR003961) - T[1-79] 2.8 - T[133-211] 0.0025 - T[212-286] 0.28 - T[298-377] 5.6E-7 - T[388-462] 3.5E-6 - T[474-549] 14.0 |
| CDD |
FN3_dom (IPR003961) - T[3-79] 7.31883E-4 - T[133-210] 1.13387E-4 - T[216-296] 1.93988E-4 - T[298-387] 1.27063E-7 - T[392-472] 7.50198E-8 |
| Gene3D |
Ig-like_fold (IPR013783) - T[3-96] 1.3E-8 - T[131-222] 1.3E-8 - T[291-389] 1.1E-10 - T[390-480] 8.1E-10 |
| Pfam |
FN3_dom (IPR003961) - T[4-79] 1.5E-6 - T[134-210] 2.9E-6 - T[299-380] 1.7E-5 |
| SUPERFAMILY |
FN3_sf (IPR036116) - T[5-126] 7.02E-10 - T[133-296] 2.19E-14 - T[296-477] 9.48E-19 - T[469-551] 7.69E-5 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[559-595] 20.337 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[560-595] 1.4E-4 |
| SMART |
EGF-like_dom (IPR000742) - T[562-595] 7.1E-7 |
| Pfam |
EGF-like_dom (IPR000742) - T[563-592] 1.4E-7 |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[574-585] . |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[583-594] . - T[583-594] . |
| Protein Name | Identity | Bit Score | e-value |
|---|