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TRANSCRIPT CARD

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  1. Transcript 'Haaura.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S112.g02206.01.t

Possible name(s)

GATA3; GATA4; GATA6

Location

S112 [17,282 / 27,983]

Sequences

Amino acid sequence

Length: 811

>Haaura.CG.MTP2014.S112.g02206.01.p
SNQSMPMSANTMQPPTGVLPFTAHPYSSHQPYVHVYHPERVQAEISESNYSTLQTNTGDA
AGSGTPTESCENLSDRTASPQTHKDFITSRMSNTDLPRQMAEHAGNSPSAHDKAQWDQRT
YVTANSDGAMHDHYTEMDARIAANKYSPKSVSCLQSFTSPRKCAGSPIGDSGVEEDRGSD
VNSSANTINRSRTSLGGSSTGSAPSDQTSNYDVGSLRGGGVPSSRSYISSNFSSIESVSS
APTETHLQNIGPPALSYAQEYMTESTDDNRRILSYPSSMAHAVNYQRESGYGNPLYPGYQ
IPPNGGASGAHLNPFSHTLSYPATQTAGLIAEIPESQETISSLSHNPYPSCVGPSPELWS
GQPGSGYDTMAYPAGMAAAMRMQMTGSNLPTQYGYQDNRECVNCGSVATPLWRRDGTGHY
LCNACGLYRGGGQVRPTPLKNKGKLTSCRRQVCTNCRTTVTTLWRRSPDGSPVCNACGLY
QKLHGVARPPTMKKDSIQTRKRKPKGQGKGKKQANGKREISAVDSPVHNGFQQPSLQANT
KETSPISSSSASSLSLHNASGSSSASSALNYYHHGNSMAGDAVNLSLQYQHNTSIQSQRS
LSSGEGLGNNSVLASSGLDQTLGGRSSCSPPVEDDHTTANLGTSPSGAVSNVSTHSSNGL
RCSPDSDRYSPSHATAGHLAMYSNNVGLPRMAYPNGYALQASTIPLINSTDASSNYQSYS
LTIPGRQQSDGTVMPSSSANFHSAASFIDQPMIDTSGYRGLVATTGYHDSGSLYPASNSA
CGPTRLYRNTQHHHHPYSRPTYVKNESGLA*

Nucleotide sequence

Length: 2,433

>Haaura.CG.MTP2014.S112.g02206.01.t
AGCAATCAATCGATGCCCATGTCGGCCAACACGATGCAGCCCCCGACTGGGGTCCTTCCT
TTTACCGCTCACCCATATTCTTCTCATCAGCCGTATGTACACGTTTACCATCCTGAAAGA
GTGCAAGCGGAGATCTCGGAATCTAACTATTCAACACTGCAGACAAATACGGGTGACGCT
GCTGGTTCTGGTACTCCTACCGAGAGCTGTGAAAATTTGAGCGATCGAACAGCTAGTCCG
CAAACTCACAAAGACTTCATTACGAGCAGAATGAGTAACACCGATCTTCCACGTCAAATG
GCTGAACATGCAGGAAATTCGCCTTCAGCGCACGACAAAGCTCAATGGGATCAACGAACA
TATGTGACCGCCAACTCGGACGGTGCTATGCACGATCATTACACCGAAATGGACGCTCGC
ATAGCAGCCAATAAATATTCTCCAAAGTCGGTTTCATGCCTTCAGTCTTTTACCAGTCCG
AGAAAATGTGCTGGAAGTCCCATAGGTGATTCTGGTGTCGAAGAAGATAGAGGCTCCGAC
GTCAATAGCAGTGCAAATACTATCAATAGGAGTAGAACGAGCTTGGGCGGTAGCAGTACT
GGTAGCGCTCCCAGCGACCAGACTTCCAATTATGATGTTGGATCTTTGCGAGGTGGTGGT
GTCCCTTCATCTCGTAGCTACATTTCGTCCAACTTTTCATCAATAGAGTCAGTGTCATCT
GCTCCGACAGAAACGCATTTGCAAAATATCGGTCCACCAGCACTAAGCTATGCTCAAGAA
TACATGACAGAATCAACTGATGACAATAGACGTATATTGTCGTACCCGTCTAGCATGGCT
CATGCCGTCAACTACCAACGAGAATCGGGTTATGGGAACCCTCTTTATCCCGGTTACCAG
ATTCCTCCGAACGGAGGTGCGTCGGGAGCTCACCTCAACCCATTTTCTCACACACTGTCT
TATCCGGCCACGCAAACAGCCGGACTAATAGCGGAAATTCCGGAGTCTCAAGAAACCATT
TCGTCGTTGAGCCACAATCCCTATCCGTCCTGTGTCGGACCTTCTCCCGAACTGTGGTCC
GGACAGCCAGGCTCTGGCTACGATACCATGGCGTATCCAGCCGGGATGGCAGCCGCCATG
CGAATGCAAATGACAGGTTCAAATCTGCCGACGCAATACGGTTATCAAGACAATCGTGAA
TGCGTTAATTGTGGATCAGTAGCAACTCCATTGTGGCGACGAGACGGTACTGGTCATTAC
CTATGCAACGCATGTGGACTTTACCGAGGTGGCGGACAAGTTAGACCTACGCCACTGAAG
AATAAAGGGAAATTGACCTCTTGTAGACGTCAGGTATGCACAAACTGCAGAACAACCGTA
ACCACACTTTGGCGCCGGAGTCCGGATGGGAGTCCTGTCTGCAATGCATGCGGCTTGTAT
CAGAAATTGCATGGAGTAGCAAGACCCCCTACTATGAAGAAAGACAGCATTCAGACCAGA
AAAAGAAAGCCCAAAGGTCAAGGTAAAGGCAAAAAACAAGCGAACGGAAAGCGAGAAATT
TCTGCCGTAGATTCGCCCGTGCACAACGGATTCCAACAGCCATCGTTGCAAGCAAATACG
AAAGAAACTTCGCCTATTTCGTCATCGTCTGCCTCGTCGTTATCCCTGCATAACGCGAGC
GGGAGCAGTAGTGCCTCTAGCGCCCTCAACTACTATCACCACGGCAACAGCATGGCAGGT
GATGCGGTGAACCTTAGCTTACAGTACCAGCATAACACAAGCATTCAAAGTCAACGTAGC
TTGTCCAGTGGCGAAGGACTTGGAAATAATTCGGTACTTGCTTCATCGGGCCTCGATCAA
ACCCTCGGCGGGAGATCGAGCTGTTCTCCTCCGGTGGAAGACGATCACACCACCGCCAAT
TTGGGAACTTCGCCCTCGGGAGCCGTAAGTAACGTGTCGACTCATTCTTCCAATGGTCTT
AGATGTTCACCAGATTCAGATCGGTACAGTCCTTCACATGCCACTGCGGGACATCTAGCA
ATGTATTCCAATAATGTAGGATTACCTCGGATGGCCTACCCGAATGGATACGCGTTGCAA
GCCAGTACGATCCCGCTAATCAATTCGACCGATGCTTCGAGCAATTACCAAAGTTATTCA
CTAACTATTCCCGGTCGTCAACAGAGTGATGGTACGGTGATGCCCTCGTCCAGTGCCAAT
TTTCATTCGGCAGCCAGCTTTATAGATCAGCCTATGATAGATACATCGGGCTATAGAGGA
CTTGTAGCTACAACGGGATATCACGATAGTGGGTCCCTTTATCCGGCGTCCAATTCTGCT
TGCGGGCCCACGCGCCTTTATCGCAATACACAACACCATCATCATCCGTACTCAAGACCT
ACTTACGTGAAAAACGAATCGGGTTTAGCATGA

InterProScan

Gene3D
Znf_NHR/GATA (IPR013088) - T[394-443] 1.3E-17 - T[448-513] 6.0E-26
SMART
Znf_GATA (IPR000679) - T[395-444] 9.8E-12 - T[447-497] 3.3E-21
ProSiteProfiles
Znf_GATA (IPR000679) - T[395-449] 20.983 - T[453-500] 25.928
PRINTS
Znf_GATA (IPR000679) - T[397-414] 1.1E-10 - T[415-432] 1.1E-10
ProSitePatterns
Znf_GATA (IPR000679) - T[401-425] . - T[453-477] .
Pfam
Znf_GATA (IPR000679) - T[401-428] 7.4E-11 - T[453-486] 9.3E-15

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
GATA6_HUMAN 65.254 % 162 2.8E-42
GATA4_HUMAN 61.789 % 164 1.07E-43
GATA3_HUMAN 50 % 155 8.37E-41