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TRANSCRIPT CARD

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  1. Transcript 'Haaura.CG.MTP2014.S1...'
  2. Region 'REG00000789'
  3. Transcript 'Haaura.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S1121.g07651.01.t

Possible name(s)

RAB1A; RAB1B; RAB35

Location

S1121 [7,908 / 10,829]

Sequences

Amino acid sequence

Length: 264

>Haaura.CG.MTP2014.S1121.g07651.01.p
MAREYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEIDGEKVKLQ
IWDTAGQERFRTITSTYYRGTHGVIVVYDVQSAESFVNVKRWLHEIEQNCDIVNKILVGN
KDDEPDKKVVETVDAQKFTDQINIKLFETSAKENKNVEEMFTEVTRQVLRTKKTAEASGQ
SQNADNLRLDVYENHSHETEAENRITDAANVLKVTIFGSDTPKPHLQSPRNSFYHLQTRT
CHRSRGTTLKSLSKKQLTRLHFKT

Nucleotide sequence

Length: 792

>Haaura.CG.MTP2014.S1121.g07651.01.t
ATGGCTAGAGAATACGACCATTTATTTAAACTGCTCATTATCGGAGACAGTGGTGTCGGG
AAGAGCAGTCTGCTATTAAGATTTGCAGACAATACCTTTTCGGGGAGTTACATCACAACC
ATCGGTGTCGATTTTAAAATACGGACAGTGGAAATCGATGGAGAAAAAGTAAAGCTACAG
ATTTGGGACACGGCCGGGCAGGAGCGTTTTCGGACCATAACCTCAACGTATTACCGCGGC
ACTCACGGTGTCATTGTTGTCTATGACGTACAAAGCGCAGAGTCATTCGTGAACGTTAAG
CGATGGCTTCACGAAATCGAACAAAATTGCGATATCGTTAACAAGATTCTAGTCGGTAAT
AAGGACGATGAACCTGATAAAAAGGTGGTCGAAACTGTGGATGCGCAGAAGTTCACGGAT
CAGATTAATATTAAACTATTTGAAACAAGTGCAAAAGAGAACAAAAACGTTGAAGAGATG
TTCACAGAAGTGACAAGACAAGTATTAAGAACAAAGAAGACTGCGGAAGCATCCGGACAA
AGCCAAAATGCCGATAATCTTAGGCTGGATGTATACGAAAATCATTCTCACGAAACGGAA
GCAGAGAACAGAATCACTGACGCCGCTAATGTATTGAAAGTAACAATCTTTGGTTCTGAC
ACACCAAAACCCCACTTACAATCACCCAGAAACTCATTTTATCATCTACAAACAAGAACC
TGTCATCGATCGCGGGGGACTACATTAAAAAGCCTTAGCAAGAAGCAATTGACGCGGCTG
CATTTTAAAACC

InterProScan

SUPERFAMILY
P-loop_NTPase (IPR027417) - T[4-175] 1.55E-60
TIGRFAM
Small_GTP-bd_dom (IPR005225) - T[9-164] 2.4E-32
Pfam
Small_GTPase (IPR001806) - T[10-169] 2.3E-60

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RAB1A_HUMAN 58.602 % 225 1.52E-74
RAB35_HUMAN 85.549 % 305 4.5E-106
RAB1B_HUMAN 59.162 % 231 7.53E-77