- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g68687.01.t
Possible name(s)
POC1B; TAF5; WDR70
Gene model
Location
chrUn [391,257,413 / 391,259,210]
Amino acid sequence
Length: 598
>Boschl.CG.Botznik2013.chrUn.g68687.01.p
MGFGGFGKKAKVFDLASIFEETRRNAQSRSKKTLEEREEAETSANAIAQSGTDVESEDEM
IGPPIPTDLDIEKSQELDKESDEVVEKDDTDSENVTIIPASHEITLNHGVKPVSAVALDP
SGARLFSGSYDFDVNLWDFAGMDNSFRSFRHFQPCECHQIRHINYSATGENVLIISGNSQ
AKVFNRDGFEVLECIKGDQYLNDMFKTAGHTAALNCGTWHPKVRSEFMTCSNDGTVRTWD
LSSEGKTSKMIRKCKDKSGRRTTPTCCTYNREGSLLAVACNDGSIQMWDEKMKVHTTHSL
RNCHTTGTDTTCITFAYDSQLLSTRGGDDTVKIWDIRQFKRPVAVAQNLDNFFPMTDCVF
SPNNKIVVTGISVRKGKGKGKLIFMDTNELEIVNEMEVSDASVIRCIWHPKLNQILVGTG
DGNVKVLYDPQRSFRGAKLCVVKKRQKTNHAEVFIRHKIITPYSLPLYRDQRERSTRKQL
EKDRKDHVKSKRPQPPLSGPGAGGRITAHGSTLSSFIMKSIAKNTADDSNPREAILRHAE
VAAKEPRYVSHAYVDTQPEAIFEQEPEEEPETLEPAWKKLKRNKASGLQKKEEGKDAK
Nucleotide sequence
Length: 1,797
>Boschl.CG.Botznik2013.chrUn.g68687.01.t
TGGGTTTCGGCGGGTTCGGAAAGAAAGCCAAAGTCTTCGATCTAGCCTCCATATTTGAAG
AGACCAGACGAAACGCACAAAGTCGTAGCAAGAAAACGTTAGAAGAGAGAGAAGAAGCAG
AGACGTCCGCAAATGCTATTGCCCAGAGTGGTACTGATGTAGAGTCGGAAGATGAAATGA
TTGGGCCTCCGATACCAACCGACTTGGACATAGAAAAAAGCCAAGAACTCGATAAAGAAT
CAGATGAAGTGGTTGAAAAGGATGATACTGACAGTGAAAACGTGACAATAATACCTGCTA
GCCATGAAATCACATTAAATCATGGTGTAAAGCCTGTATCTGCGGTCGCTTTAGACCCGT
CCGGAGCCCGCCTTTTCAGTGGCAGCTACGACTTTGACGTTAACCTATGGGATTTCGCTG
GCATGGACAACAGTTTTAGATCGTTCCGACATTTCCAACCGTGCGAATGCCACCAAATAC
GTCACATAAATTACAGCGCCACCGGCGAAAACGTGTTGATAATATCTGGTAATTCACAAG
CAAAAGTCTTTAACAGAGATGGGTTTGAGGTTTTGGAATGCATTAAAGGCGATCAATATT
TAAACGATATGTTCAAAACCGCAGGTCACACGGCTGCTTTAAATTGTGGAACTTGGCATC
CTAAAGTCCGTTCCGAATTCATGACTTGTTCAAATGACGGTACAGTTAGAACTTGGGACC
TTAGTTCTGAAGGAAAGACTTCGAAAATGATTCGAAAATGCAAGGATAAATCAGGACGCC
GTACAACCCCAACATGTTGTACTTACAATCGTGAGGGGAGCTTGCTGGCTGTTGCCTGTA
ACGACGGCTCGATTCAAATGTGGGATGAAAAAATGAAGGTGCACACGACACACTCGTTAC
GTAATTGCCACACAACGGGCACGGACACGACATGCATTACATTCGCGTACGATTCTCAGC
TTTTGTCCACACGCGGAGGCGATGATACAGTCAAAATTTGGGACATACGTCAATTTAAGC
GGCCCGTCGCTGTCGCGCAGAATCTAGACAACTTTTTCCCGATGACGGACTGCGTTTTCA
GTCCTAATAACAAAATAGTAGTGACCGGAATATCGGTACGTAAAGGGAAAGGTAAAGGAA
AATTAATATTCATGGACACAAATGAGCTGGAAATTGTAAACGAAATGGAGGTATCAGACG
CGAGTGTGATACGGTGCATCTGGCACCCGAAACTGAATCAAATTTTAGTAGGAACTGGTG
ATGGAAATGTAAAAGTTTTGTATGATCCGCAAAGAAGTTTCCGCGGGGCAAAACTTTGCG
TTGTTAAGAAACGCCAAAAGACAAACCACGCAGAAGTTTTCATTAGACATAAGATCATTA
CACCGTACTCGCTACCTCTGTACCGCGACCAGAGAGAACGTAGCACTAGAAAACAGTTGG
AAAAAGACAGGAAAGATCATGTTAAATCAAAAAGACCGCAGCCGCCATTGTCAGGTCCTG
GTGCAGGTGGCCGTATCACCGCGCACGGTAGCACGTTATCTTCGTTTATCATGAAAAGCA
TCGCTAAAAATACGGCGGACGATTCTAATCCGAGAGAAGCGATTTTACGGCACGCTGAGG
TCGCCGCCAAAGAGCCTAGGTACGTTTCACACGCATACGTGGATACTCAGCCTGAAGCGA
TATTCGAGCAGGAGCCGGAAGAGGAGCCGGAAACGCTGGAGCCCGCTTGGAAGAAATTGA
AAAGGAATAAGGCGTCGGGTTTGCAGAAAAAAGAAGAAGGAAAAGATGCTAAGTAAA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[17-199] 5.4E-9 - T[200-438] 6.4E-32 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[85-426] 3.46E-48 |
| SMART |
WD40_repeat (IPR001680) - T[99-138] 0.0023 - T[145-185] 200.0 - T[198-240] 0.0059 - T[247-289] 0.0022 - T[293-335] 0.76 - T[389-428] 4.4 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[106-344] 20.224 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[106-138] 10.275 - T[207-249] 11.444 - T[311-337] 9.172 |
| Pfam |
WD40_repeat (IPR001680) - T[107-138] 0.0034 - T[265-289] 0.26 - T[299-335] 0.012 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[125-139] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[125-139] 3.2E-5 - T[227-241] 3.2E-5 - T[322-336] 3.2E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR70_HUMAN | 50.159 % | 660 | 0 |
