- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g64710.01.t
Possible name(s)
COL12A1; COL6A3; COL6A6
Gene model
Location
chrUn [373,366,770 / 373,381,645]
Amino acid sequence
Length: 1,063
>Boschl.CG.Botznik2013.chrUn.g64710.01.p
AQCCFIFHSFRIVSENEDFKPVEKLIEFAADQREVPVTIHILDDNEKPVLEGIETFYISL
QFPSKATIKEPETTKILINDKELDASVTEKWCGLINGRHFETFDAGEYEFSASCRYLLLD
SDCKNTPKITIEVDGEIVNLPYSKKIYGLMIIRNGNAIEYKTDAGLINIYDHVGLCGNNN
DDKEDDLDQLDPPVYIQKWKIGDDMMCQPIADAPPVEAPNCEKEFDTGECSCNIMIDPDD
CFVNCMDEIDSKRLFDINGKMYRSYKEPRFSVTKMGRYYVVKTDFGLKILSKKFYVLTYI
PESYKGKVNNSCTLPDVEDCVCEPGFVKDGEDCIEISECGCVVNGAGYVSKGYSVMNSDC
TQTCSCTGANQFDCIESKCNKNELCVSNKLGEFNCKGPLAAGCSGGSTVDLILVLDSSGS
VGYRNFQIVKKFVQKIVDALPVGPKDVQVGAITFTRGPRDLWALNKYPNKDDLLSAIGDI
PYRKGGTKTGKALTFVHDEKLTALAGRRPGVPAVVAVVTDGKSYDEVSTPAYMLQKKATI
IAVGVKAIESLDYTRGGTKTGNAISAMTRQKFSKSQGRRKGIDAVTVIITDGKSYDRVTA
PSVELRKESYVNISEISIGEFPLTTFYIKVLALGVKNARKSQLDAMASAPIEIFSRLIKS
FYELDTIHGLMFNLICKSLTSDGDKCVATSKTDLLFIVESSGSVGKSNFESVKTFVANVI
ERLEIGRKNILVGMMTYNRGYRDQWQLDTYADNKEGLISAVKDLRYTSGGRRISNALEFA
SKKKFTPSSGRRSDVPSVTIVITVGKSRGKFTVEARNLQSVSKVVALGIGDVDRKYLNAI
ASDPSLVQNPKDYEDLDAAVDLTIVSLCAAQDSVDAAEYEWTQWFDRDNPSASGDHEKLM
DLRKENPNKICEEPNKIEARLVKTKKPSESAGEKVSMDAKTGFSCLNKDQKDKRCEDYEV
RFSCPDDSDVPTGHEWTKWYDRDDPSATGDHEKLEKLRKENPDQICEKPSKIQARLVTTK
KAAQSTGENISMDAKEGFSCMNSKQDDKRCEDYEVRFACPKGD
Nucleotide sequence
Length: 3,194
>Boschl.CG.Botznik2013.chrUn.g64710.01.t
TGCACAATGTTGCTTCATTTTTCATTCATTTCGTATCGTTTCAGAAAATGAAGATTTTAA
ACCAGTTGAGAAACTGATTGAGTTTGCTGCGGACCAACGAGAAGTTCCAGTGACCATCCA
TATTCTCGACGACAACGAAAAACCGGTTTTGGAAGGGATCGAAACCTTTTACATTTCACT
GCAATTTCCCAGCAAAGCTACAATCAAAGAACCTGAAACGACGAAAATACTCATCAACGA
CAAGGAACTTGATGGCTCTGTAACGGAGAAGTGGTGCGGATTGATTAACGGAAGACATTT
TGAAACGTTTGATGCTGGAGAATACGAGTTCAGCGCCTCTTGTAGATATCTGCTGCTGGA
TTCAGACTGCAAAAACACTCCAAAAATCACTATTGAGGTTGATGGCGAAATTGTAAATCT
TCCATATTCAAAGAAAATTTACGGCTTGATGATCATCAGGAACGGAAATGCTATCGAGTA
TAAAACAGATGCCGGATTGATCGATATTTATGATCATGTAGGATTGTGTGGAAATAACAA
CGATGATAAAGAGGATGACCTTGATCAGTTGGATCCGCCTGTATATATACAGAAATGGAA
GATCGGCGATGATATGATGTGTCAACCTATTGCTGACGCACCTCCTGTGGAAGCCCCAAA
TTGTGAAAAAGAATTCGACACTGGTGAATGTTCATGCAATATCATGATCGACCCTGACGA
TTGCTTTGTTAATTGTATGGACGAGATCGACTCAAAAAGGCTCTTCGATGTAAATGGGAA
GATGTATCGCAGTTACAAAGAACCCAGATTTTCTGTGACCAAAATGGGCCGTTACTATGT
TGTGAAAACAGATTTTGGACTGAAGATATTGAGCAAAAAGTTTTATGTTTTGACCTACAT
TCCTGAGAGCTACAAAGGAAAGGTGAATAATTCGTGCACGTTACCGGATGTTGAGGACTG
CGTGTGCGAACCAGGATTTGTTAAAGACGGCGAAGATTGCATTGAGATTTCAGAATGTGG
ATGTGTTGTTAATGGCGCGGGATATGTATCCAAAGGCTACTCAGTCATGAATTCAGACTG
TACACAAACTTGCAGTTGTACTGGTGCCAACCAGTTTGATTGCATAGAGTCAAAGTGCAA
CAAAAATGAATTATGCGTTTCAAACAAATTAGGGGAATTCAATTGCAAAGGACCACTTGC
CGGCGGCTGTTCTGGAGGCAGCACCGTTGATCTCATCCTTGTTCTTGACTCGAGTGGATC
AGTGGGCTACCGAAATTTCCAGATTGTCAAGAAATTCGTGCAGAAAATCGTAGATGCGTT
ACCCGTTGGACCAAAGGACGTCCAAGTCGGCGCTATCACATTCACACGCGGACCCAGGGA
CTTGTGGGCTCTCAATAAGTACCCGAACAAAGACGATTTGCTTTCGGCAATCGGCGATAT
TCCGTATCGCAAAGGAGGAACTAAGACAGGGAAAGCTCTTACTTTCGTTCACGATGAAAA
ACTGACGGCGCTTGCTGGTCGCAGACCCGGCGTCCCAGCGGTGGTCGCTGTGGTCACAGA
CGGAAAATCATACGACGAAGTATCAACTCCAGCGTATATGCTTCAGAAAAAAGCGACAAT
CATTGCCGTCGGTGTAAAGGCTATCGAATCTCTGGATTATACAAGAGGTGGTACAAAGAC
AGGAAACGCCATCTCTGCTATGACAAGACAAAAATTCAGCAAGTCTCAAGGACGAAGAAA
GGGTATCGACGCGGTCACGGTTATCATAACGGATGGAAAGTCGTATGATAGAGTGACAGC
TCCATCTGTTGAACTCAGAAAAGAGTCATATGTAAATATATCTGAAATTTCCATCGGAGA
ATTTCCACTCACGACTTTCTACATAAAGGTATTGGCGCTCGGAGTGAAAAATGCCAGAAA
GTCTCAACTGGATGCAATGGCTTCTGCTCCGATCGAAATATTTTCGAGGCTCATCAAATC
ATTTTACGAATTAGATACCATTCACGGATTGATGTTCAATTTGATTTGCAAATCTCTAAG
CTCTGATGGTGATAAATGCGTTGCAACATCCAAAACAGATCTTCTTTTCATTGTGGAATC
GAGCGGATCTGTTGGGAAATCGAATTTCGAATCAGTCAAAACCTTTGTCGCAAATGTTAT
CGAAAGACTTGAAATCGGCCGGAAAAACATTTTGGTCGGCATGATGACTTACAATCGGGG
CTACCGGGATCAATGGCAGCTTGACACTTACGCCGATAATAAAGAAGGACTCATCTCCGC
CGTTAAAGATTTGCGATACACTAGCGGTGGCAGGAGAATTAGCAATGCTCTTGAATTCGC
TTCAAAGAAAAAATTCACTCCGTCGTCTGGCCGCAGATCGGACGTTCCCAGCGTCACGAT
CGTAATCACCGTCGGCAAATCGAGAGGTAAATTCACGGTCGAGGCTAGAAACTTACAGTC
CGTGTCCAAGGTTGTGGCGCTCGGTATTGGTGACGTGGACCGAAAGTATCTGAACGCAAT
TGCTAGTGATCCCAGTTTGGTACAGAATCCTAAAGATTACGAAGATCTGGATGCCGCCGT
GGATTTGACGATTGTATCTTTATGTGCTGCGCAAGGCTCGGTGGATGCTGCTGAATACGA
ATGGACTCAGTGGTTTGACAGGGATAATCCAAGTGCTAGTGGAGACCACGAGAAACTGAT
GGACCTTAGGAAAGAAAATCCAAATAAGATTTGTGAAGAACCAAATAAAATTGAAGCTAG
GCTGGTAAAAACCAAGAAACCTTCTGAAAGCGCTGGAGAAAAAGTATCGATGGATGCAAA
AACAGGATTTTCTTGTCTCAATAAAGACCAAAAAGACAAGCGTTGTGAAGATTATGAAGT
TCGCTTTTCTTGCCCAGACGGCTCAGATGTCCCCACGGGGCATGAATGGACCAAATGGTA
TGACAGAGACGATCCATCAGCTACTGGCGACCATGAAAAATTAGAGAAATTAAGGAAGGA
AAACCCTGACCAGATTTGTGAAAAACCTAGTAAAATCCAAGCAAGGCTTGTGACAACCAA
GAAAGCAGCTCAAAGCACAGGAGAGAACATCTCCATGGATGCAAAGGAAGGATTTTCCTG
CATGAACAGCAAGCAAGATGATAAACGCTGTGAAGATTACGAAGTTCGCTTTGCTTGTCC
TAAAGGTGATTGAC
| Gene3D |
CalX-like_sf (IPR038081) - T[13-82] 9.7E-9 |
| SUPERFAMILY |
CalX-like_sf (IPR038081) - T[16-82] 1.11E-8 |
| Pfam |
VWF_type-D (IPR001846) - T[94-133] 1.1E-4 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[407-546] 5.1E-37 - T[547-687] 1.7E-16 - T[689-879] 4.7E-38 |
| SMART |
VWF_A (IPR002035) - T[408-572] 7.7E-36 - T[691-868] 2.5E-31 |
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[408-545] 8.07E-38 - T[546-677] 1.75E-15 - T[685-867] 3.76E-37 |
| ProSiteProfiles |
VWF_A (IPR002035) - T[410-545] 23.232 - T[546-675] 11.063 - T[693-863] 24.676 |
| Pfam |
VWF_A (IPR002035) - T[410-547] 1.1E-30 - T[693-857] 6.8E-31 |
| Pfam |
WxxW_domain (IPR025155) - T[880-964] 1.7E-24 - T[975-1059] 4.1E-24 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COCA1_HUMAN | 35.417 % | 112 | 1.04E-24 |
| CO6A6_HUMAN | 24.854 % | 109 | 5.46E-24 |
| CO6A3_HUMAN | 27.077 % | 118 | 1.12E-26 |
