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  1. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chrUn.g63315.01.t

Possible name(s)

COL21A1; MATN2; VIT

Gene model

Boschl.CG.Botznik2013.chrUn.g63315

Location

chrUn [366,970,531 / 366,976,722]

Sequences

Amino acid sequence

Length: 221

>Boschl.CG.Botznik2013.chrUn.g63315.01.p
IYVSAPKGNLSIPDVGSTGGRIYKCAMNFNIGSESTCSVRGIPPDIQPDDVFPLTLNHKK
PSFQGCSPSKTVECDKVPLTPGICYKSEDDGDTWSQLNNDTTSCPLADVDMMFVLDGSYS
IGDANFELVKQWVINLSSQFRIERGNVRVGVIQYSHFFDDSIEDDSTQPYIKTEVELGSQ
MSTVSLEVFVTYTNSGYTSVFQSAWAILRIRWRKRKNGSKI

Nucleotide sequence

Length: 667

>Boschl.CG.Botznik2013.chrUn.g63315.01.t
ATATACGTTTCTGCCCCAAAGGGAAATCTGTCGATCCCAGATGTCGGAAGTACAGGAGGA
AGAATATATAAATGTGCCATGAACTTCAATATCGGTAGCGAGTCTACGTGTTCCGTCCGA
GGCATTCCTCCTGACATCCAACCTGATGACGTGTTCCCGCTGACATTAAACCACAAAAAA
CCATCCTTTCAGGGTTGTTCCCCGTCGAAGACCGTCGAGTGTGATAAGGTTCCTCTTACC
CCGGGAATCTGTTACAAGAGCGAAGACGACGGAGACACTTGGAGTCAACTTAATAATGAT
ACCACGTGTTGTCCGTTGGCGGACGTCGATATGATGTTCGTCTTGGATGGCTCGTATTCA
ATCGGAGACGCCAATTTCGAATTGGTGAAACAGTGGGTGATCAACCTGTCCTCTCAGTTT
CGGATAGAGAGAGGAAATGTTAGAGTGGGTGTGATCCAATACTCTCACTTTTTCGACGAT
TCCATGGAAGACGATAGCACCCAGCCATACATCAAAACGGAAGTGGAGCTTGGGAGCCAG
ATGTCAACGGTATCACTTGAGGTATTTGTCACATATACGAACTCGGGCTACACCAGTGTT
TTTCAAAGTGCATGGGCGATTTTAAGAATCAGGTGGCGAAAACGTAAGAATGGGTCAAAA
ATTTAGT

InterProScan

Gene3D
Integrin_alpha_N (IPR028994) - T[12-105] 1.8E-25
SUPERFAMILY
vWFA_dom_sf (IPR036465) - T[88-158] 1.34E-16
Gene3D
vWFA_dom_sf (IPR036465) - T[106-202] 1.8E-25
Pfam
VWF_A (IPR002035) - T[110-178] 7.2E-12
ProSiteProfiles
VWF_A (IPR002035) - T[110-221] 12.437

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value