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TRANSCRIPT CARD

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  1. Region 'REG00001491' > 
  2. Transcript 'Boleac.CG.SB_v3.S395...' > 
  3. Molecular Tool 'pCi-Bra::Tbx6c' > 
  4. Transcript 'KH2012:KH.C1.583.v2....' > 
  5. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chrUn.g60020.01.t

Possible name(s)

AFG3L2; SPG7; YME1L1

Gene model

Boschl.CG.Botznik2013.chrUn.g60020

Location

chrUn [353,159,504 / 353,161,120]

Sequences

Amino acid sequence

Length: 538

>Boschl.CG.Botznik2013.chrUn.g60020.01.p
MMIQMLRISPCLQTGRRLASTSTRNHVFTRIKIQDWHFHSLAQHKFAQSTVIGLRYFHVT
PVVQSDQHQSKKENTPNDKLPFFFGLGLSAFISYMLYITFTDGGSSDSPFKFSMSFKDFV
EEVLPTGEVVALNMNSYSGGHKARAMLRRGASFKGNSYPIPVLIEITDIKNAEEFERIIR
NAEKAMGLSPTEGIPIRHQLVSTGDAFAAVGLLLATVTLLILLISRAQSVMRSSGGMTSV
GKLTPSSNIKKVQTGIKFTDVAGCSEAKQEVMEFVHYLKHPEKYQKLGAKMPRGCLLTGP
PGVGKTLLAKAVASEAEVPFISKAGSDFVEMIGGLGAKRVRELFKEARSVAPCIVYIDEL
DAVGAKRSSDNSQMSGASERDQTLNQILVEMDGILSTAHDVIVMASTNRVDMLDKALLRP
GRFDRHISIDLPTKIERKDIFEIHMNKLKLKDPHSAYSDRLADLSPGMSGADIANICNEA
AICAARDKDTHIDAGHFEQAFERVLGGSKKKSSALSPDERKIVSVHEAGHTLVGWMLK

Nucleotide sequence

Length: 1,616

>Boschl.CG.Botznik2013.chrUn.g60020.01.t
TGATGATACAAATGCTTCGAATATCGCCTTGCCTACAAACTGGACGACGACTGGCCAGTA
CGAGTACAAGAAACCATGTTTTCACACGGATAAAGATACAGGACTGGCATTTCCACTCTC
TTGCCCAACATAAATTTGCTCAAAGCACAGTCATCGGATTGAGATATTTCCATGTCACGC
CGGTGGTTCAGAGCGATCAACATCAATCCAAAAAAGAAAATACTCCCAATGACAAACTCC
CATTCTTCTTTGGACTTGGCCTGTCGGCTTTCATCTCATACATGCTGTACATTACATTCA
CTGATGGAGGATCCAGTGACTCTCCTTTCAAATTTTCAATGTCTTTCAAAGATTTTGTGG
AAGAGGTGTTACCAACTGGTGAAGTGGTAGCGTTGAATATGAATTCATATTCAGGAGGGC
ACAAAGCCCGTGCTATGCTTCGACGTGGGGCTTCTTTCAAGGGTAATTCTTACCCTATTC
CTGTTTTGATCGAAATAACCGACATCAAAAATGCAGAAGAGTTTGAGAGGATCATTCGTA
ATGCGGAAAAAGCAATGGGACTCAGTCCGACTGAAGGAATACCAATCAGACATCAACTTG
TGAGTACCGGTGATGCGTTCGCTGCGGTGGGATTACTATTGGCAACTGTGACATTGTTGA
TATTGTTAATATCACGTGCGCAATCTGTTATGCGCAGTTCAGGCGGAATGACGTCTGTTG
GTAAGCTAACGCCAAGTAGTAACATAAAGAAAGTCCAAACTGGCATCAAATTCACAGATG
TGGCAGGTTGTTCTGAAGCGAAACAAGAGGTAATGGAATTCGTCCACTATTTAAAGCATC
CTGAAAAATACCAAAAACTAGGCGCTAAAATGCCGAGAGGCTGTCTTCTCACAGGCCCAC
CCGGTGTCGGTAAAACCTTACTAGCTAAAGCAGTTGCTAGTGAGGCAGAAGTCCCGTTCA
TATCAAAGGCCGGTTCTGACTTTGTTGAAATGATTGGTGGGCTCGGTGCCAAAAGAGTAC
GTGAGCTGTTTAAAGAAGCACGCTCGGTAGCGCCGTGCATTGTGTACATTGATGAATTAG
ATGCTGTCGGTGCGAAACGGTCTTCCGATAATTCTCAAATGTCAGGCGCCTCTGAACGAG
ATCAAACTTTGAATCAAATTCTAGTGGAAATGGACGGTATTTTGAGTACGGCTCATGATG
TAATTGTTATGGCGTCGACGAATCGTGTTGATATGTTAGATAAAGCTCTTTTGAGACCCG
GTCGATTCGACAGGCATATTTCAATCGATTTACCGACTAAAATTGAAAGAAAAGACATTT
TTGAGATACACATGAACAAACTGAAATTGAAAGATCCACACTCTGCCTACTCTGATCGCT
TAGCGGATTTATCTCCAGGCATGAGTGGCGCCGACATCGCTAATATCTGTAATGAAGCCG
CGATTTGTGCAGCCCGAGATAAAGACACTCACATCGACGCCGGTCACTTCGAACAAGCCT
TCGAACGAGTGCTGGGCGGATCCAAGAAAAAATCATCCGCCCTTTCCCCGGACGAGCGAA
AAATAGTTTCGGTTCACGAAGCCGGGCATACTCTCGTCGGTTGGATGCTAAAGTAA

InterProScan

SUPERFAMILY
P-loop_NTPase (IPR027417) - T[256-527] 6.0E-61
SMART
AAA+_ATPase (IPR003593) - T[291-433] 1.1E-17
Pfam
ATPase_AAA_core (IPR003959) - T[296-430] 1.8E-38
Pfam
Peptidase_M41 (IPR000642) - T[496-538] 1.1E-10

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SPG7_HUMAN 50.93 % 398 3.3E-130
AFG32_HUMAN 42.227 % 356 3.37E-114
YMEL1_HUMAN 42.254 % 234 3.5E-68