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  1. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chrUn.g59186.01.t

Possible name(s)

CPN2; IGFALS; TRIL

Gene model

Boschl.CG.Botznik2013.chrUn.g59186

Location

chrUn [349,359,669 / 349,368,398]

Sequences

Amino acid sequence

Length: 524

>Boschl.CG.Botznik2013.chrUn.g59186.01.p
MLESSGSTLWCDGSRYNYTSDIKMMDSDIADIADQIKTLYINDSRLLALEVGGLSHFSKL
TTFVAEDNFLVHLKAGTFKPNSLLETIDISMNRIGVIEDGAFEGLGSLIHLDISSNNINK
ITRQKFRGLRSLEYLSLSGNHLQIILGRVFIDLKRLKTLTLKAVFRTTKNKCNIIYLDVN
DDVSAPMVLQVDHNSLTKIEETTFQRNLALEFLNLSMNAIDAIPPNAFSNNRNLCTLLMR
GNHLRTPEKGWFSNLHKLASATITIDMDDNDWWCDCDTKSYENYVIELANQGESNLSDQL
DVVCSSNKEYEGRLLSLDIYCPQYGSTTSTTNSPKPSPSSSPSTTTAISTTTRRLFGVLG
IIAGKPAGTSTSMKLISTTAEIMKSSEKQNEAMHAFQPTPSPIISGLKSNSNSTPTVVIV
VAVVAAVLIIGVIIFKQKSKKGYATSCRSSRRKRHPSTQPMLEDRPYSVDLTEPFSGSDE
DIPARLGHELHPMGSLQHAGENDRFYTPSSTPQVLSRTEHDGAV

Nucleotide sequence

Length: 1,575

>Boschl.CG.Botznik2013.chrUn.g59186.01.t
TGCTCGAATCCAGCGGCTCAACGTTATGGTGCGACGGATCGCGATACAATTACACATCTG
ATATTAAGATGATGGACTCCGATATTGCCGATATTGCCGACCAAATAAAAACGCTTTATA
TCAACGACAGTCGGCTGCTAGCTTTAGAAGTCGGCGGACTTTCACATTTCTCAAAACTGA
CGACGTTTGTAGCGGAAGACAACTTTCTTGTCCATTTGAAAGCAGGAACTTTCAAGCCGA
ACTCACTGCTAGAAACCATTGATATTTCGATGAACCGAATTGGTGTTATCGAGGACGGTG
CATTTGAAGGTTTGGGCTCTCTTATCCATCTGGACATTTCATCAAATAACATCAACAAAA
TCACGAGACAAAAGTTCAGAGGGCTACGAAGCTTGGAGTATTTGTCATTGAGCGGCAACC
ATCTGCAAATAATCCTTGGTCGTGTTTTCATTGATTTAAAACGACTTAAAACGCTAACGT
TGAAAGGCGTTTTTCGTACAACGAAGAATAAATGCAATATTATATATTTGGATGTGAATG
ATGACGTTTCGGCACCGATGGTTTTGCAAGTCGACCACAATTCACTAACGAAGATTGAGG
AAACAACATTTCAAAGGAATCTTGCTCTCGAATTTTTAAACCTCAGCATGAACGCAATCG
ACGCAATACCACCAAATGCCTTTTCCAATAATCGGAATTTATGCACGTTGCTTATGAGAG
GGAACCATTTAAGAACACCCGAGAAAGGATGGTTTTCAAATTTACATAAATTGGCAAGCG
CGACAATTACTATAGACATGGACGACAACGACTGGTGGTGCGACTGTGACACCAAATCGT
ACGAAGATTATGTCATTGAATTAGCGAACCAAGGTGAGTCTAACCTTTCGGACCAGCTGG
ATGTAGTCTGTAGTAGCAACAAAGAATACGAGGGAAGGCTGTTGAGCCTGGACATTTACT
GCCCGCAATATGGCTCCACGACATCTACCACCAACAGCCCAAAACCCTCGCCGAGTTCAA
GCCCTTCTACAACTACCGCTATAAGTACTACTACTCGTAGATTATTCGGTGTCTTAGGTA
TAATAGCTGGAAAACCGGCTGGAACTTCTACATCAATGAAACTCATTTCGACAACTGCAG
AAATAATGAAATCGAGTGAGAAACAGAACGAAGCGATGCACGCATTTCAGCCAACTCCCT
CTCCTATTATTTCAGGACTCAAAAGCAACTCTAACTCCACACCTACTGTGGTCATTGTAG
TCGCTGTTGTTGCCGCTGTTTTGATAATAGGCGTTATTATTTTTAAACAAAAAAGTAAAA
AGGGGTACGCCACCTCCTGTCGGTCATCAAGGAGAAAACGACATCCCTCCACGCAACCGA
TGTTGGAGGATCGTCCATACAGTGTGGATTTAACGGAACCTTTCAGTGGATCGGACGAAG
ATATTCCAGCTCGATTAGGTCACGAGCTTCACCCAATGGGATCATTGCAACATGCTGGCG
AGAATGACAGATTCTACACGCCTAGTTCAACACCGCAAGTCCTCAGTCGGACAGAACATG
ACGGCGCTGTTTGAC

InterProScan

Gene3D
LRR_dom_sf (IPR032675) - T[6-181] 5.9E-26 - T[182-323] 1.5E-20
SMART
Leu-rich_rpt_typical-subtyp (IPR003591) - T[57-80] 320.0 - T[82-104] 160.0 - T[105-128] 6.4 - T[129-152] 0.75 - T[209-230] 6.8
Pfam
Leu-rich_rpt (IPR001611) - T[84-142] 7.7E-18 - T[188-244] 5.1E-11

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
ALS_HUMAN 29.927 % 81.6 2.58E-16
TRIL_HUMAN 25.424 % 94.7 2.35E-20