- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g58717.01.t
Possible name(s)
AMY1A; AMY1B; AMY1C
Gene model
Location
chrUn [346,825,489 / 346,833,528]
Amino acid sequence
Length: 567
>Boschl.CG.Botznik2013.chrUn.g58717.01.p
MCGAGGSGTGTGGTYFDADSLDFPGVPYGYTDFNTECTGGINYADPWSVRNCWLVGLTDL
NQGKDYVRGKMIDFMNDMINIGVAGFRVDACKHMYPGDLGAIFGGLSDLRSDVFGSGQRA
YIFQEVIDQGGEPITAGEYTGIGAVTEFKYGINVGNNVHSLQYLSNLGEAWGMLAGTSAL
VFINNHDNQRGHGGGGSIVTFEEPEELKILTAFMLAWPYGVPRVMSSYYFSNSEEGPPPN
QRYVNEDGSCGNGWVCEHRWRQIKNMFSFSAAVVGTGVDNWWTNDNNQIAFSRGSKGFFA
ANNAGYGMSEYLYTGLPDGSYCNVILGDFYDGKCAGDCVTVSGGTAQVNVDGSGENRVFA
IHVDAMTTQCNVGGGIDGGGNGGGNTGGGGYIETTCTDCTCPDTEKVDCGELASTEATCT
ASGCLWCPLTDGSNAPWCFHKASEESSTSSPGNGGSNGGGDESCVDCNCPSHKKTDCGFL
GIDANGCNIEGCLWCESSVSGDPWCFYPDSDGDGTGDSGTRQCYVDDADKTDCGYMGVDQ
QQCELDGCCWAESNTNGVPWCYHQVQG
Nucleotide sequence
Length: 1,704
>Boschl.CG.Botznik2013.chrUn.g58717.01.t
CATGTGCGGTGCAGGCGGTTCGGGCACTGGAACCGGGGGTACTTACTTCGACGCGGATTC
CCTGGACTTTCCGGGAGTTCCCTACGGCTACACGGACTTCAACACAGAATGCACGGGTGG
CATCAATTACGCAGATCCGTGGTCGGTGAGGAATTGCTGGCTTGTCGGCCTGACCGATCT
CAATCAAGGGAAGGATTACGTCCGAGGAAAGATGATCGATTTCATGAATGACATGATCAA
CATCGGTGTCGCCGGATTCAGAGTCGACGCTTGCAAGCACATGTACCCGGGAGACTTGGG
AGCCATTTTCGGAGGCCTGAGTGATCTTAGAAGCGACGTGTTTGGCTCTGGGCAAAGAGC
ATACATATTCCAAGAAGTCATCGACCAAGGAGGCGAACCAATCACTGCTGGCGAGTACAC
CGGAATCGGTGCTGTGACAGAATTCAAATACGGCATCAACGTCGGCAACAACGTTCACTC
TCTGCAGTACTTGTCAAACCTTGGAGAAGCTTGGGGTATGCTCGCGGGAACCAGCGCTTT
GGTCTTCATCAACAACCACGACAACCAGAGAGGACACGGCGGAGGAGGAAGCATCGTTAC
GTTCGAAGAGCCGGAAGAACTCAAGATCTTGACGGCTTTCATGTTGGCGTGGCCGTACGG
AGTCCCGAGAGTCATGTCGAGCTACTACTTCAGCAACTCAGAAGAGGGACCCCCACCTAA
CCAACGTTACGTGAACGAGGACGGATCGTGCGGGAACGGTTGGGTTTGCGAGCACAGATG
GAGGCAGATCAAAAACATGTTCTCATTCTCAGCGGCCGTTGTCGGCACCGGAGTCGACAA
TTGGTGGACCAACGACAACAACCAGATCGCGTTTTCCCGCGGATCGAAAGGATTTTTCGC
CGCCAACAACGCCGGATACGGCATGAGCGAATACCTGTACACCGGATTACCGGACGGATC
ATACTGCAACGTAATCCTCGGAGATTTCTACGACGGCAAATGCGCGGGCGACTGCGTCAC
CGTTTCTGGAGGAACCGCGCAGGTCAATGTCGACGGCAGCGGAGAAAACCGAGTTTTTGC
GATCCACGTAGACGCTATGACGACTCAGTGCAACGTAGGCGGCGGAATAGATGGTGGAGG
TAACGGTGGTGGCAACACAGGCGGTGGTGGTTATATCGAGACCACCTGTACGGATTGCAC
TTGCCCGGATACCGAGAAGGTTGACTGCGGCGAGTTGGCGTCCACGGAAGCCACCTGCAC
AGCCTCTGGATGTCTCTGGTGTCCTCTCACGGACGGTAGCAATGCCCCATGGTGCTTCCA
CAAGGCTTCCGAGGAGTCTTCGACATCAAGCCCTGGAAATGGAGGATCTAATGGCGGCGG
AGACGAGTCTTGCGTGGACTGCAACTGCCCCTCCCACAAGAAGACCGACTGCGGGTTCCT
CGGAATCGACGCGAACGGTTGCAATATCGAAGGGTGCCTTTGGTGCGAGAGCTCTGTGAG
CGGGGATCCGTGGTGCTTCTATCCGGATAGTGACGGAGACGGAACCGGAGACAGTGGAAC
GAGACAATGCTACGTGGAGGATGCAGACAAGACCGATTGTGGTTACATGGGAGTCGACCA
ACAGCAATGTGAGTTGGATGGCTGTTGTTGGGCAGAGTCGAACACAAACGGAGTACCCTG
GTGCTATCATCAAGTGCAAGGATG
| SMART |
Glyco_hydro_13_cat_dom (IPR006047) - T[1-270] 3.3E-9 |
| SUPERFAMILY |
Glycoside_hydrolase_SF (IPR017853) - T[9-269] 2.9E-57 |
| Pfam |
Glyco_hydro_13_cat_dom (IPR006047) - T[55-218] 2.3E-5 |
| PRINTS |
Alpha_amylase (IPR006046) - T[83-94] 3.2E-16 - T[121-139] 3.2E-16 - T[177-189] 3.2E-16 |
| Gene3D |
Glyco_hydro_b (IPR013780) - T[277-372] 2.2E-29 |
| SMART |
A-amylase_C (IPR031319) - T[279-366] 4.2E-31 |
| Pfam |
A-amylase/branching_C (IPR006048) - T[282-350] 1.5E-9 |
| SMART |
P_trefoil_dom (IPR000519) - T[397-445] 2.6E-6 - T[465-512] 0.0056 - T[521-567] 1.1E-5 |
| ProSiteProfiles |
P_trefoil_dom (IPR000519) - T[397-442] 13.839 - T[465-509] 13.037 - T[521-565] 15.432 |
| CDD |
P_trefoil_dom (IPR000519) - T[398-441] 1.85276E-5 - T[466-509] 1.16665E-4 - T[522-563] 2.27193E-9 |
| Pfam |
P_trefoil_dom (IPR000519) - T[399-440] 1.1E-7 - T[467-508] 8.4E-7 - T[523-563] 3.0E-10 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| AMYP_HUMAN | 47.583 % | 333 | 3.29E-108 |
| AMY1_HUMAN | 48.092 % | 338 | 2.62E-110 |
| AMY2B_HUMAN | 48.042 % | 333 | 2.57E-108 |