- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g53691.01.t
Possible name(s)
GRWD1; RBBP4; RBBP7
Gene model
Location
chrUn [327,179,448 / 327,180,627]
Amino acid sequence
Length: 392
>Boschl.CG.Botznik2013.chrUn.g53691.01.p
MTHXLEWPSLTVQWLPDITKPEGKDYTVHRAILGTXXTDEQNHLIIASIQLPNDQEHLES
ASLDTERGEFGGFGSVVGKIDIEIKINHEGEVNRARHMPQNPCVIATKTPSCDVLIFDYT
KHPSKPNNDGISNPDLRLKGHLKEGYGLSWNPCAAGQLLSASDDHTVCMWDITSSAKESK
VXNAKAVYKGHTXVVEDVAWHCLHENVFGSVADDQTXMVWDTRSKSSDKPSHTVSAHTAE
VNCLAFXPYSEYILATGSADKTVALWDLRNLKLKLHSFEHHKDEIFQVQWSPHTETILAS
SGTDRRLNVWDLSKIGEEQXNEDAEDGPPELLFVHGGHTAKISDFSWNPNEQWTICSVXE
DNIMQIWQMAENIYNEDQEIAGPTVELNQGDS
Nucleotide sequence
Length: 1,179
>Boschl.CG.Botznik2013.chrUn.g53691.01.t
TATGACTCACGCNTTGGAGTGGCCTAGCCTAACTGTGCAATGGCTACCGGACATTACGAA
ACCCGAAGGTAAAGACTACACCGTCCATAGAGCTATCTTAGGAACCCANACNACCGACGA
GCAAAATCACCTCATAATTGCCAGCATTCAACTTCCGAACGATCAAGAGCATCTCGAATC
TGCAAGTCTAGACACAGAACGAGGTGAATTCGGTGGTTTTGGATCAGTCGTCGGGAAAAT
CGATATTGAAATCAAAATAAATCATGAAGGAGAAGTCAACCGTGCCCGTCATATGCCACA
AAATCCTTGCGTGATCGCGACTAAAACTCCATCCTGCGACGTGCTCATTTTTGACTACAC
TAAACATCCCAGCAAACCGAATAATGACGGGATTAGTAACCCTGACCTACGGCTCAAGGG
TCACTTGAAGGAAGGATATGGATTGTCCTGGAATCCGTGCGCTGCCGGTCAATTACTGAG
TGCTTCCGACGATCATACCGTTTGCATGTGGGATATAACTTCTTCTGCAAAGGAAAGTAA
AGTTTTNAACGCAAAAGCCGTTTACAAAGGTCACACCGCNGTTGTGGAAGACGTAGCGTG
GCATTGCCTGCATGAAAACGTATTTGGATCAGTCGCTGACGATCAAACGCTNATGGTATG
GGATACGAGATCGAAAAGCTCCGATAAACCAAGTCACACAGTCAGTGCTCACACAGCGGA
AGTAAACTGCCTTGCGTTTAANCCGTATAGCGAATATATACTCGCTACTGGATCAGCGGA
CAAGACTGTCGCCTTGTGGGACTTGAGGAATTTAAAATTGAAGTTACATTCGTTCGAGCA
CCACAAGGATGAAATCTTCCAAGTGCAGTGGTCACCGCATACTGAGACTATTCTCGCGTC
TAGCGGTACCGACAGACGTCTCAACGTCTGGGATCTGAGCAAGATCGGAGAGGAACAGTC
NAATGAGGATGCCGAGGACGGCCCGCCTGAATTACTCTTTGTGCACGGTGGACACACCGC
CAAGATATCCGATTTCTCTTGGAATCCTAACGAGCAATGGACTATCTGTTCGGTGTCNGA
AGATAACATTATGCAGATATGGCAGATGGCGGAGAATATATATAATGAAGATCAGGAAAT
CGCCGGGCCTACCGTCGAACTGAATCAAGGAGACTCTTG
| Pfam |
Histone-bd_RBBP4_N (IPR022052) - T[1-53] 2.1E-13 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[1-382] 1.2E-141 |
| SMART |
WD40_repeat (IPR001680) - T[79-118] 120.0 - T[131-171] 8.7E-4 - T[181-221] 0.1 - T[227-267] 6.9E-10 - T[271-311] 2.3E-6 - T[328-368] 0.012 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[86-372] 1.63E-49 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[138-377] 32.799 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[138-180] 10.676 - T[234-270] 13.583 - T[278-313] 12.447 |
| Pfam |
WD40_repeat (IPR001680) - T[139-171] 0.11 - T[229-267] 1.9E-7 - T[275-311] 0.001 - T[332-367] 0.074 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[158-172] . - T[254-268] . - T[298-312] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[158-172] 1.7E-8 - T[254-268] 1.7E-8 - T[298-312] 1.7E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| GRWD1_HUMAN | 28.761 % | 110 | 7.92E-27 |
| RBBP7_HUMAN | 75.397 % | 620 | 0 |
| RBBP4_HUMAN | 77.984 % | 643 | 0 |