- Transcript 'Harore.CG.MTP2014.S9...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S97.g02530.01.t
Possible name(s)
RBM4B; ZC3H7A; ZC3H7B
Gene model
Location
S97 [46,373 / 59,682]
Amino acid sequence
Length: 1,552
>Harore.CG.MTP2014.S97.g02530.01.p
MQRLLKCMLLFKFVTFHKVLYLRYLVTVVGDSDQLQKLFEKFGEVSDCDILRDYGFVHMA
DESHALKAIRELDRLELGGSRISVELSTSRSMKSCQLIVGNLPDGTSSHDVHRLFKKFGT
VTLCRISGGQAMVHMRWASMAVQAIRNLNGETYKGCVLSVQFANSTNTSMVKNIKDDWYG
TAPNQPNQPRSTSSVGPRYIQNDGIQPLTSTETSYTSVWNNFTNDPHSNHILSNGTGPDT
NFHSGSPGSNQNNNLPNNGLMSVDPLSSIQNAIPIMKDTNMMGDQKSQGNTCEIIGNLSG
DSPSHSTISSSSYEEINKQPELTKSRNDRRQYIAHGLQFLQSPMPWTGSPDDYTSFLNKM
KQMLLQEGSELRREGRYSDAVQKLSEALNMCKYMESEGIKGHSTNLVTLITERSAALIEL
GQYNPALEEANKALQLSNGSSQEAMRCKAKALMKIGKAKDAYDLMIHFSQCNNMLDSESS
ELINNLTQMLGLLTRKPYRPATQSFSPFLNNHSSGDIIPGPGSDPQNYVGIPAKPDSGSA
NISSVSHQSLESFSSTNQALIIATESQTYRPFLSGKESFSDPSFKPRLKEVTSLNSSNQS
ISGNPNRMMQTTQPNQIGLMQGFNKTPGTALHGYPSTAGGMMGERPGSTSNVMNGAVVPG
GPSKMVAPIGPQRPVGSRMSANPYSGFSNHEPQSGSLIGDSLRKNMEIISENQQISMFGQ
PSHSGSSLQSVMENSLDLVSGIKNLAVNTKLPDNSGEVHNSKVSTGTNGPGSKMWNYMSG
NHALNNNNNGQINNGNHAFNSGMPAPIGYREPFSSLNMGGDASLLLSPGIQHGIRPDFPG
SSNNSGSLPFLTSSGDSAFNMSAGHSKTKDMNGTDGSDVKASGHTDFSLVGNFQNSSTLT
SSSNQFGALRLSSDPISFPQSAPSYTHFPQVSGQQLGLGQLFGPSALGLGISSSLPTTSP
SQIPAQPTQPSIASIVGNQKAQSEQSEDSLDIMNAETDESLDSYLRNPLHNTHEFLLGCS
DCVIKTGPKVIDYRYDSILNHMCYKNILLCRRRDATEWHKIRPRPQPQSKAQLYDGPYYI
CKDLLAGQDCTYPVVCTFAYNQEEIDVWTLERKQMLNRRWLFDSLDEEYMRDLTVVGRVL
CKHRGLFNFLCHACFTNKPRIISTFSIGTGKCIHANSEHAEVPENRQLTHILRDTAVRYT
AIRAPAQQPILCRHEVRFQCTREMECHFAHSLVERDVWALMIKKGLTSEQIVEQSHDYIS
KLNTNANALEQGITQSTDLGVPMFRWKVKFICSLCYKNGQISEATKDRKYCLARAQHSWA
TNKKTVLVQTIRKDWTQIRDLPYLKNKGLPARFELCENIRRQKKCPFSIKCNFAHSQEEL
DIWIYLRDNQLKDLEDLHDSLNKDKQLKTNKGSLPGSDPNAIRLPTDFLPQSAFHCWLCN
KECNGQRQWEQHCSSVKHRLGALSDADGNWKYRNPGGEYEICERHLKNMCEYDYVLPGDN
KCRYAHSTEELEEWRQRREYVINRIKKAQNDNLISSSDDMDKLIKESQQQMQ
Nucleotide sequence
Length: 5,778
>Harore.CG.MTP2014.S97.g02530.01.t
ATGCAACGATTGCTAAAATGTATGCTTCTCTTCAAGTTTGTAACATTCCACAAAGTATTG
TATTTACGCTATTTGGTTACTGTAGTCGGTGACTCCGACCAGCTGCAAAAGCTATTCGAA
AAATTTGGCGAGGTGTCCGACTGTGACATCTTACGGGATTACGGCTTTGTCCACATGGCA
GACGAAAGCCATGCTCTGAAAGCGATAAGGGAATTGGATCGCTTGGAACTGGGCGGCAGT
AGGATAAGTGTGGAGTTGTCAACTTCTCGTTCTATGAAGTCATGTCAGTTGATAGTAGGG
AACCTTCCTGACGGAACATCTTCTCACGACGTTCATAGACTATTTAAAAAGTTTGGTACA
GTTACCTTGTGTCGTATTTCTGGTGGACAGGCTATGGTTCACATGCGTTGGGCTTCAATG
GCTGTTCAGGCGATCCGCAATCTGAACGGAGAGACCTACAAGGGATGTGTATTGTCGGTA
CAATTTGCCAATAGCACTAATACATCTATGGTGAAAAATATCAAAGATGACTGGTATGGT
ACGGCTCCAAATCAGCCCAACCAGCCCCGATCCACAAGTTCTGTCGGCCCAAGGTACATT
CAAAATGACGGAATCCAGCCACTGACCAGTACGGAAACTAGTTACACTTCAGTTTGGAAT
AACTTCACGAATGATCCGCATTCTAACCATATACTATCTAACGGGACCGGGCCTGACACT
AACTTTCATTCTGGGAGTCCAGGTTCTAATCAGAACAATAATTTGCCAAATAATGGTTTG
ATGTCTGTAGACCCTTTGTCCTCGATTCAAAATGCTATTCCTATCATGAAAGACACCAAC
ATGATGGGTGACCAAAAATCGCAAGGAAACACTTGCGAAATTATCGGTAACCTTAGCGGG
GATTCTCCTAGTCATTCAACAATATCAAGTTCAAGTTACGAAGAAATTAATAAACAACCA
GAGTTGACGAAATCAAGAAACGATAGAAGGCAATATATTGCACATGGACTTCAATTTTTG
CAGTCTCCCATGCCTTGGACAGGTTCACCTGACGATTATACGAGTTTTCTCAACAAAATG
AAGCAAATGTTATTGCAAGAAGGCTCCGAGCTTAGGCGAGAAGGCAGATATTCCGACGCG
GTGCAGAAGCTGAGCGAAGCCCTCAACATGTGCAAGTACATGGAATCAGAAGGCATTAAA
GGTCACAGCACGAATCTTGTCACTTTGATCACTGAAAGATCAGCAGCTTTGATTGAACTT
GGACAGTACAATCCTGCTTTGGAAGAAGCTAACAAAGCACTGCAGCTAAGCAATGGATCT
AGCCAGGAAGCTATGCGTTGCAAAGCGAAGGCATTGATGAAGATAGGAAAGGCAAAGGAT
GCTTACGATTTGATGATTCATTTTTCCCAATGCAATAATATGCTGGATTCTGAATCGTCT
GAGCTGATTAACAATTTAACCCAGATGCTGGGTTTACTAACAAGGAAACCATATCGCCCT
GCGACCCAATCCTTCAGTCCGTTTTTAAATAACCACTCGTCAGGGGACATTATTCCAGGA
CCTGGTTCTGACCCGCAAAACTATGTTGGGATCCCAGCTAAACCTGACAGCGGTTCTGCT
AATATCTCTTCCGTGTCTCATCAAAGTTTGGAAAGTTTCAGCAGTACGAATCAAGCGCTT
ATTATTGCAACGGAGTCGCAGACCTACAGGCCGTTTTTATCTGGGAAAGAATCTTTTTCT
GATCCAAGTTTCAAACCTCGTTTGAAAGAGGTGACTTCGCTGAACAGTTCTAATCAAAGT
ATATCAGGTAATCCGAACAGAATGATGCAAACAACTCAACCTAACCAAATCGGTCTAATG
CAAGGCTTCAACAAAACTCCGGGCACAGCATTACATGGCTATCCTTCCACAGCAGGCGGT
ATGATGGGAGAAAGACCCGGCTCAACCAGCAACGTGATGAATGGTGCAGTAGTGCCAGGC
GGCCCGTCAAAGATGGTTGCCCCTATCGGGCCGCAGAGGCCAGTAGGTTCTAGGATGTCC
GCTAATCCATATAGTGGATTTTCCAACCACGAACCTCAGTCTGGCTCGTTAATCGGCGAT
TCACTCAGGAAGAATATGGAGATCATATCGGAAAATCAGCAGATTTCAATGTTTGGTCAG
CCTTCGCATTCAGGCAGTAGTTTACAGAGCGTTATGGAGAATTCCCTTGATCTTGTTTCT
GGCATCAAAAATTTAGCTGTTAATACCAAACTACCTGATAATAGTGGCGAGGTACACAAT
TCCAAGGTCAGCACAGGGACCAACGGTCCGGGTTCGAAAATGTGGAACTACATGAGCGGG
AACCATGCGCTGAACAACAACAACAATGGCCAAATTAACAACGGAAATCACGCTTTTAAT
TCTGGAATGCCGGCACCGATAGGTTACAGAGAACCGTTTTCGTCGCTGAACATGGGAGGA
GATGCGTCGCTTCTCTTATCTCCAGGGATTCAACATGGAATCAGGCCCGATTTTCCCGGT
TCTTCCAATAACTCCGGGAGCCTCCCATTTTTGACAAGTTCCGGGGACTCTGCTTTTAAT
ATGAGTGCGGGCCACAGCAAAACAAAAGATATGAATGGAACAGATGGAAGTGATGTCAAG
GCTTCTGGCCATACGGACTTTTCACTGGTTGGAAACTTTCAGAATTCCAGTACCCTAACT
AGTTCTTCCAATCAATTTGGCGCTCTTCGGTTGTCGAGTGATCCGATTTCATTCCCGCAG
TCTGCCCCTAGCTACACTCATTTTCCTCAAGTCTCTGGCCAGCAGTTAGGCCTAGGTCAA
CTCTTTGGACCGAGCGCCCTCGGTCTAGGGATATCAAGCAGCCTTCCTACGACTTCCCCG
AGTCAAATTCCAGCTCAGCCAACTCAACCATCAATTGCTTCTATCGTTGGAAACCAGAAA
GCTCAGAGTGAACAGTCGGAGGATTCGCTAGACATCATGAACGCTGAGACCGATGAGTCT
CTGGACAGCTACTTGCGAAATCCTTTGCATAACACTCACGAATTTCTACTCGGCTGCTCT
GACTGTGTGATCAAAACTGGACCTAAAGTCATTGATTACAGGTACGACTCAATTTTGAAC
CACATGTGCTACAAAAATATCTTGTTATGCCGAAGAAGAGACGCAACCGAGTGGCACAAA
ATACGTCCACGGCCACAGCCCCAGTCGAAAGCGCAGTTGTATGACGGGCCATATTATATA
TGCAAGGATCTTCTTGCTGGTCAAGATTGTACATACCCAGTTGTGTGCACATTTGCATAC
AATCAGGAAGAGATTGATGTTTGGACTCTGGAAAGGAAACAGATGTTGAATAGGAGGTGG
CTTTTTGATTCCCTTGACGAAGAGTATATGCGTGATCTCACTGTTGTCGGACGGGTTCTT
TGCAAACACAGAGGGTTGTTTAATTTTCTTTGCCACGCATGCTTCACCAATAAACCTCGC
ATCATCAGTACTTTCAGTATAGGTACAGGGAAATGCATCCATGCTAATTCCGAACACGCA
GAGGTGCCAGAGAATAGACAGCTGACTCATATTTTACGCGACACAGCCGTTCGCTATACT
GCAATCCGTGCGCCGGCACAGCAGCCTATTTTATGTCGCCATGAGGTGAGATTCCAGTGT
ACCAGGGAAATGGAATGTCATTTTGCCCATAGCCTTGTTGAACGTGACGTTTGGGCACTC
ATGATAAAGAAAGGCCTCACTTCAGAACAGATTGTTGAACAATCTCATGATTACATCTCG
AAATTAAACACAAATGCCAATGCGTTGGAGCAGGGAATTACTCAGAGTACGGATTTGGGT
GTTCCTATGTTTAGATGGAAAGTCAAATTCATATGCTCGCTTTGCTACAAAAACGGTCAA
ATAAGTGAAGCAACGAAAGACCGGAAATACTGTCTTGCCCGCGCTCAACATTCCTGGGCT
ACGAATAAGAAAACGGTGCTCGTTCAAACGATACGAAAAGACTGGACCCAGATCCGTGAT
TTGCCTTACTTGAAAAATAAGGGACTGCCCGCAAGATTTGAACTGTGCGAGAATATAAGG
CGGCAGAAAAAATGTCCTTTCTCAATCAAATGCAATTTTGCTCATTCTCAAGAAGAACTC
GACATATGGATATACCTCCGTGACAATCAACTAAAAGATCTTGAAGACCTTCATGACTCG
TTAAACAAGGACAAACAACTGAAGACAAACAAAGGATCTCTTCCAGGGTCTGATCCCAAT
GCAATAAGGTTACCCACAGATTTCTTGCCGCAGAGCGCCTTTCACTGTTGGCTGTGTAAT
AAGGAGTGCAACGGTCAAAGGCAATGGGAACAACACTGTTCTTCAGTAAAGCATAGGCTT
GGTGCATTGTCAGATGCTGATGGAAATTGGAAGTATAGAAATCCTGGCGGAGAATATGAA
ATATGTGAACGACACCTCAAAAACATGTGTGAATACGATTATGTGTTACCCGGTGATAAT
AAGTGCAGATATGCTCACAGCACAGAGGAGCTTGAGGAATGGCGTCAGCGAAGGGAATAC
GTCATCAATCGAATTAAGAAAGCGCAGAACGACAACTTAATCAGCTCAAGTGATGACATG
GACAAATTGATAAAAGAATCGCAACAGCAAATGCAATAATGTTAATAAGGCAGACACAAC
GATGTCTGTCTGCCGGCCCGTCTCGTTTGTCTGTTTTCGACTTGTCCTTCGACTATCTGA
CCAATACGATTTCTACTACTGCTGACAATTTTATGCTGCGATCAAAATATAAACTGGCGT
TGCGCTCTTGCTTTTAATTGAGCGATTGTATTTTTTTCTCCTTTCCTTTGCATGATTATA
ATTTCTACATTGTATGTGACCTGAGATACTGAGACACACAAATGTTCCAGGATTGTTGCA
TTCGTATATTCCCTCGAACTAATGGGAATGGGACAATGAATTTTACTACATTTCATCTTG
CTACGTAAGGAGCAAATTTCCCAAATGGCTGCTACCATTTTTTCATTCATTCATAGTTTC
CTACCAATGTGTCCTCTGCTATGGATGTTGTTCTCGCTTTTATGCGAATTTGTTCTAGGT
ATATATCTATCATCTGTTTCTTGCAGTATGTCTTGGTGAAGAAATTTTGAAAATTTGATG
TTCGTTAGGAGGCGTGTATTTATACCTATTAATGAATTTTATAACCGCGCGGTTCAACCG
TTTTCTATTGGTATTTTGCCAATGCCACGCTATTTCGCCTTACTCCTACATTTTCATATT
CTGCGAACACTTTTGCATGGTCAAATTATCACATAGTTTTCAAAATTGCATTCTCCAACG
CCAACTTCATATTAGCATCATTTCTGCTGTCATTTTTTCCTATTGTTGTTTCTGTGCTAA
TTGTCTGGGTGTACTCGTACTTGTATTTTGAGGAAGGAACCAGGAAAATGTTTCTTTTTT
TATTCCTACTGCTTTTGCTTTTTGGCAAATGAAGATCATTAGGATCATTGTATTCTTTAT
TAATAAATACACAGTGTAAAGGATGATTTGATTCGAATGATACAAGTTGACTGAGAAGAT
ATATAAGGAGATTGCATCCCTTTGATAGCACTAATTACTGGGATATGGGATTATTTCTGG
TATTAAAAAAATGTTGAATTGATTTGAAACTAGTGGTGTAGAGAGGTGAGGGGTGTTCCC
TTACTTTTCCTCCAAAAAACTCAAATAAACCAATGACAATTGTGATTAATATCCACACCA
CTATTATTATTAATACAC
| ProSiteProfiles |
RRM_dom (IPR000504) - T[18-89] 13.652 - T[95-165] 12.117 |
| SMART |
RRM_dom (IPR000504) - T[19-85] 2.1E-13 - T[96-161] 4.8E-9 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[22-89] 1.4E-14 - T[90-176] 2.4E-15 |
| Pfam |
RRM_dom (IPR000504) - T[31-82] 1.4E-9 - T[97-158] 5.2E-8 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[32-166] 8.11E-28 |
| Gene3D |
TPR-like_helical_dom_sf (IPR011990) - T[352-494] 4.5E-12 |
| SUPERFAMILY |
TPR-like_helical_dom_sf (IPR011990) - T[361-471] 5.7E-11 |
| ProSiteProfiles |
Znf_CCCH (IPR000571) - T[1206-1233] 9.066 - T[1350-1378] 10.878 - T[1481-1509] 6.305 |
| SUPERFAMILY |
Znf_CCCH_sf (IPR036855) - T[1352-1382] 2.35E-5 |
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[1430-1459] 3.93E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RBM4B_HUMAN | 38.636 % | 103 | 2.97E-23 |
| Z3H7B_HUMAN | 39.671 % | 410 | 6.46E-123 |
| Z3H7A_HUMAN | 39.854 % | 409 | 4.18E-123 |
