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TRANSCRIPT CARD

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  1. Region 'REG00000884' > 
  2. Transcript 'KH2012:KH.L149.21.v1...' > 
  3. Region 'REG00000430' > 
  4. Transcript 'Phmamm.CG.MTP2014.S3...' > 
  5. Transcript 'Harore.CG.MTP2014.S9...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S92.g08611.01.t

Possible name(s)

PAK1IP1; TAF5L; WDR5B

Gene model

Harore.CG.MTP2014.S92.g08611

Location

S92 [236,126 / 237,419]

Sequences

Amino acid sequence

Length: 325

>Harore.CG.MTP2014.S92.g08611.01.p
MLRVIAGCYEQMLLGYTIHKNDDEDSTYPFRGELEFTDHSHSGCVKAVTAGESYLASGGT
DETVFLIDLNDKKEVGSLQGHEGSITHLSFPDKNYLMSSSDDGAINLWKVSAKWNKVKSL
RGHRGPVSSFDVHPSGKLALSVSSKDGTLRTWNMLSGRAVYVKNLKKFCPETVKFSPGDG
ELYLIASSTNVQVCKLENAVCIADISLEKSILCTEFLSKDIVAVAGEEGVIYIHSTQDGS
QLCSIESHTSRVKALHRIITPASFSNPEESVWFGSISSDGYFKIWSVNVTDMKDKNKTTF
QSPKCILAIDTKARLTCFTSWSSES

Nucleotide sequence

Length: 978

>Harore.CG.MTP2014.S92.g08611.01.t
ATGCTGAGAGTGATAGCTGGGTGCTACGAGCAAATGTTGCTTGGATATACCATCCATAAA
AATGATGATGAAGATTCAACATATCCTTTCAGAGGGGAGTTAGAGTTTACTGACCATTCT
CATAGTGGCTGTGTGAAGGCTGTTACAGCCGGAGAATCTTATCTGGCGTCAGGAGGAACA
GATGAAACAGTTTTCCTCATCGATTTGAATGATAAAAAGGAGGTTGGTTCACTACAAGGA
CATGAAGGAAGCATCACCCACTTGAGTTTTCCTGACAAAAATTATTTGATGAGCTCTAGT
GACGATGGTGCAATAAACTTGTGGAAGGTTTCGGCGAAGTGGAATAAAGTGAAATCGTTA
CGTGGTCACAGAGGCCCGGTGTCATCGTTTGACGTTCATCCGAGTGGAAAACTAGCACTG
TCCGTGTCTTCCAAAGATGGCACGCTAAGAACCTGGAACATGCTGAGTGGCCGTGCCGTA
TATGTCAAAAACCTGAAAAAGTTTTGTCCGGAAACAGTCAAGTTTAGTCCTGGCGATGGG
GAACTTTACTTAATCGCATCGTCGACAAATGTACAAGTTTGCAAACTAGAAAACGCAGTG
TGTATTGCAGACATTTCCTTGGAAAAATCTATTTTGTGCACTGAATTTCTCTCTAAAGAT
ATTGTGGCAGTAGCAGGAGAAGAAGGTGTCATTTACATTCACAGTACACAAGACGGAAGC
CAGCTGTGTTCGATTGAAAGTCACACCTCTAGGGTCAAAGCCCTACACAGAATCATTACA
CCAGCTTCATTTTCAAACCCTGAAGAATCCGTTTGGTTTGGATCTATATCTAGTGATGGA
TATTTCAAAATATGGTCTGTAAATGTGACTGACATGAAAGATAAGAACAAGACTACTTTT
CAGTCGCCTAAATGTATCTTAGCTATAGATACGAAGGCGAGGTTAACATGCTTCACTTCA
TGGTCTAGTGAATCATGA

InterProScan

Gene3D
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[19-113] 1.6E-17 - T[114-325] 3.6E-23
SUPERFAMILY
WD40_repeat_dom_sf (IPR036322) - T[20-287] 3.33E-43
SMART
WD40_repeat (IPR001680) - T[31-68] 1.2 - T[71-109] 8.3E-6 - T[113-153] 2.5E-6 - T[198-235] 34.0 - T[238-286] 120.0
ProSiteProfiles
WD40_repeat_dom (IPR017986) - T[38-162] 22.702
Pfam
WD40_repeat (IPR001680) - T[73-109] 8.5E-6 - T[114-153] 4.8E-6
ProSiteProfiles
WD40_repeat (IPR001680) - T[78-111] 11.845 - T[120-162] 11.678

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
PK1IP_HUMAN 36.615 % 199 6.26E-61