- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'Harore.CG.MTP2014.S2...' >
- Transcript 'Harore.CG.MTP2014.S3...' >
- Transcript 'Harore.CG.MTP2014.S9...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S90.g11531.01.t
Possible name(s)
DNA2; IGHMBP2; UPF1
Gene model
Location
S90 [99,830 / 103,488]
Amino acid sequence
Length: 1,081
>Harore.CG.MTP2014.S90.g11531.01.p
MEEFVDLHSELLKEEHQAEKHESDHMRQSMPLKEMQNRGICISKMHIISLKTGLYGRTII
KLGLRNQNPLKSNVFSSGDIVDVIKQSNDLSSKPELQGVVTSVKQSSISIALDGDEVQSK
AGDLKTSDQNLNIFKTANQVTYERLKKGLNRLKHHSGRSSGVIDVCFNSSKPTKYSNTPK
VERFLNSSLNDSQKEAINFALSQRQLAIIHGPPGTGKTTTIVELISQLVINGQKVLTCAP
SNVAVDNILEKLSNVKVAKLSSINANPCTVKVLRIGHPARIHSTNLHRMTLDAVIARSDS
AGIVRDIRKDIDDLYCKFRKKHKREENFKLRAEKKILVKELRDREKKAIKEILSSADVVL
ATNVGSHSDGPLKHLPPDHFDVVVIDECGQALEASCWIPMLYAPKCILAGDHLQLPPTVK
SHTAAAKGLSKSLLERVTKLHNDDVVRMLNIQYRMHEKIMSWSSDNMYNSQLKAHPSVEA
HLLSDLDAIEETDETISPLVFIDTAGCDMPEHQTSENDSTGNPGEAKVVASHVCSLITAG
VDPKDIAVISPYNLQVEILRKLLHPEYPGLEIRSVDGFQGREKEAVVLSMVRSNDKGIVG
FLSDDRRTNVAVTRARRHLALICDSQTVGKHDFLRTLIDHMHEYGEVKSAHNIVEDEESG
NQIHFDPSPFLLHRKSEKEKRGKETIEEKVKLDLDVIKKKFRDILLKFKERADLDSSTTV
EYEFPSTLKGNERLAIHELCEELGLGHCSTGEGNERKIIISTVLNNPGPTKQITDLFVAK
SCRKDEETKPLEIAPQAIKPNKDQSYKKDHDLNSQSQKNVPQVIPPAVSQSTEIIQKTDS
SLDKDHEVDSQSIIPEKNLVDNAACTLCSKQIHRENLPLHQIHCERLQAMKNKFTSGKSV
TTVTSKKKAQKTKKKKNQKEISDMNDDELLDEAIRTNKLCSHSNCNQTVTLVGQTCRNCG
RVYCLEHHIPEIHGCGAAAHSAARQQISRDGILFRGSGVPSKKPSVEKHAHLHRKLEGKL
KDMSTNRTGGKLGTSLQSSEENTIIVQTFYNVRLRICDLIISAKKAVTSCEGILVLVSKN
I
Nucleotide sequence
Length: 3,246
>Harore.CG.MTP2014.S90.g11531.01.t
ATGGAAGAATTCGTTGACCTGCATTCCGAGCTTCTGAAGGAAGAACACCAGGCTGAAAAA
CACGAATCTGATCACATGCGGCAGTCTATGCCGCTTAAAGAAATGCAAAATCGAGGAATT
TGCATCTCGAAAATGCACATTATATCATTGAAAACTGGCTTGTATGGCAGAACTATCATT
AAGCTAGGATTGAGGAATCAAAACCCATTAAAATCTAATGTTTTTTCTTCTGGAGACATT
GTCGATGTAATAAAACAATCTAACGACCTTTCGTCAAAACCAGAACTTCAAGGTGTTGTT
ACATCTGTTAAACAGAGTTCCATCAGTATCGCACTAGATGGAGATGAAGTTCAATCAAAA
GCTGGTGACCTGAAAACAAGTGATCAAAATTTAAACATATTTAAAACAGCGAACCAAGTG
ACATATGAACGTCTGAAAAAGGGTCTGAATCGTTTGAAACATCATTCGGGCCGTTCTTCA
GGAGTGATTGATGTGTGTTTCAATAGCAGCAAGCCAACAAAGTACAGCAACACTCCCAAA
GTTGAGAGGTTTTTAAATTCATCATTAAATGACTCTCAGAAAGAAGCAATTAACTTTGCA
CTGTCACAGCGCCAACTAGCCATTATTCACGGTCCACCAGGTACAGGTAAAACAACAACC
ATCGTAGAACTCATCTCACAACTTGTAATCAATGGCCAAAAAGTATTAACCTGTGCTCCG
TCAAATGTTGCTGTCGATAATATTCTAGAAAAGTTATCGAATGTCAAAGTCGCCAAATTG
TCATCTATAAATGCGAATCCCTGTACAGTGAAGGTATTGAGAATAGGTCATCCAGCTAGA
ATACATTCAACCAATCTTCACAGGATGACATTGGATGCTGTCATTGCCAGAAGTGACTCG
GCTGGCATTGTCCGTGACATACGCAAAGACATCGATGACTTGTATTGCAAGTTTCGCAAG
AAGCACAAAAGGGAAGAAAACTTTAAATTGAGGGCGGAAAAAAAGATTCTTGTGAAAGAA
TTGAGGGACAGAGAAAAGAAAGCCATCAAGGAAATTCTGTCCTCTGCAGATGTTGTACTG
GCTACTAATGTAGGATCTCACAGCGATGGACCGTTGAAGCATTTACCCCCTGATCATTTC
GATGTTGTAGTTATTGATGAATGCGGTCAAGCTCTGGAAGCTTCCTGCTGGATTCCCATG
TTATATGCTCCCAAATGCATCTTGGCTGGAGACCATCTTCAACTTCCTCCTACAGTCAAA
TCACATACTGCTGCTGCTAAAGGTCTTTCAAAATCTCTTTTGGAACGAGTGACTAAACTA
CATAATGATGACGTTGTTCGAATGCTTAATATACAATACAGAATGCATGAAAAAATCATG
TCATGGTCGTCAGATAATATGTATAACTCACAACTGAAAGCTCATCCTTCAGTTGAAGCT
CATCTCTTGTCTGATCTCGATGCCATTGAGGAGACTGACGAAACGATATCACCATTGGTT
TTTATTGATACTGCCGGATGTGACATGCCAGAACATCAGACATCAGAGAATGATTCAACA
GGAAATCCTGGTGAGGCGAAGGTCGTCGCAAGCCATGTCTGCAGCCTGATCACCGCAGGA
GTAGATCCAAAAGACATTGCTGTAATATCGCCTTACAATCTCCAGGTTGAAATACTCCGG
AAACTACTTCATCCAGAGTATCCCGGTCTGGAAATAAGATCCGTGGATGGCTTTCAAGGA
CGTGAGAAGGAAGCCGTCGTCTTGTCCATGGTTCGCTCTAATGACAAAGGTATAGTAGGT
TTTCTTTCCGATGACAGAAGAACTAACGTGGCCGTTACACGTGCACGTCGGCATTTGGCT
TTGATTTGTGATTCGCAGACTGTTGGGAAACATGACTTCTTAAGAACCCTCATTGACCAT
ATGCACGAGTATGGCGAGGTTAAGTCAGCTCACAACATTGTTGAAGATGAAGAATCTGGT
AACCAAATACATTTCGACCCTTCTCCATTTTTGTTACATCGTAAAAGTGAGAAAGAGAAA
CGGGGGAAAGAAACTATTGAAGAAAAAGTAAAACTGGATTTGGATGTAATTAAAAAGAAG
TTTCGAGATATTTTGCTCAAATTTAAAGAAAGAGCTGACCTAGACTCCAGTACTACTGTG
GAATACGAGTTTCCATCAACTCTCAAAGGCAATGAGCGTCTTGCTATACATGAACTTTGT
GAAGAGTTGGGTCTGGGACATTGCAGCACTGGTGAAGGAAACGAAAGAAAAATAATAATA
TCAACGGTTCTTAACAATCCTGGGCCAACTAAACAAATCACAGATCTGTTCGTAGCAAAG
TCATGTAGGAAGGATGAAGAAACTAAACCTTTAGAAATTGCGCCTCAAGCAATCAAACCC
AATAAGGACCAATCCTACAAGAAGGATCATGATCTTAATTCTCAAAGCCAGAAGAACGTT
CCTCAAGTGATTCCTCCTGCTGTATCTCAGAGTACAGAAATCATACAGAAGACTGACAGC
TCTCTAGATAAAGATCATGAGGTTGATTCTCAATCAATAATCCCTGAGAAAAACCTTGTC
GACAATGCCGCATGTACACTATGCAGCAAGCAAATACACAGAGAAAACCTCCCATTGCAT
CAAATTCATTGCGAGAGATTGCAAGCAATGAAGAACAAATTTACATCAGGCAAAAGTGTT
ACTACTGTCACCAGCAAGAAGAAGGCGCAGAAGACTAAAAAGAAAAAAAATCAAAAAGAG
ATCAGTGATATGAACGATGATGAATTACTTGACGAGGCAATCAGAACAAACAAATTATGT
TCTCACTCTAATTGCAATCAGACAGTGACCTTGGTGGGTCAAACTTGCCGCAACTGTGGT
AGAGTGTATTGTCTGGAGCATCATATCCCAGAAATCCATGGTTGTGGTGCTGCAGCCCAC
TCCGCAGCTCGTCAACAAATCAGTCGGGATGGAATCCTGTTCCGTGGTAGTGGCGTTCCT
AGCAAGAAACCATCAGTTGAAAAGCATGCTCATCTACATAGAAAATTGGAAGGTAAATTG
AAAGATATGAGCACAAACAGAACAGGTGGCAAGTTAGGTACATCACTACAATCATCAGAA
GAAAATACTATAATAGTGCAAACATTTTACAATGTCCGCCTTCGCATTTGTGACCTAATT
ATTTCTGCCAAAAAAGCTGTTACTTCATGTGAAGGTATTTTGGTTCTGGTATCCAAAAAT
ATATAA
| TIGRFAM |
SMUBP-2/Hcs1-like (IPR004483) - T[15-651] 1.5E-190 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[185-454] 1.8E-4 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[186-652] 3.0E-71 |
| SMART |
AAA+_ATPase (IPR003593) - T[203-562] 0.0017 |
| Gene3D |
R3H_dom_sf (IPR036867) - T[682-765] 1.1E-13 |
| SMART |
R3H_dom (IPR001374) - T[687-763] 1.6E-6 |
| ProSiteProfiles |
R3H_dom (IPR001374) - T[698-764] 11.956 |
| Pfam |
R3H_dom (IPR001374) - T[701-761] 4.9E-8 |
| SUPERFAMILY |
R3H_dom_sf (IPR036867) - T[715-761] 8.63E-8 |
| SUPERFAMILY |
AN1-like_Znf (IPR035896) - T[929-993] 2.35E-13 |
| Gene3D |
AN1-like_Znf (IPR035896) - T[930-991] 6.8E-9 |
| ProSiteProfiles |
Znf_AN1 (IPR000058) - T[937-991] 8.409 |
| Pfam |
Znf_AN1 (IPR000058) - T[940-978] 2.5E-9 |
| SMART |
Znf_AN1 (IPR000058) - T[940-980] 1.4E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RENT1_HUMAN | 29.982 % | 194 | 1.28E-50 |
| SMBP2_HUMAN | 46.032 % | 681 | 0 |
| DNA2_HUMAN | 26.152 % | 180 | 4.04E-46 |