- Transcript 'Cisavi.CG.ENS81.R435...' >
- EST 'AHC0AAA226YF05_RM1' >
- Transcript 'Moocul.CG.ELv1_2.S43...' >
- Transcript 'Cisavi.CG.ENS81.R435...' >
- Transcript 'Harore.CG.MTP2014.S8...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S83.g12848.02.t
Possible name(s)
RNF13; RNF167; ZNRF4
Gene model
Location
S83 [86,365 / 96,123]
Amino acid sequence
Length: 521
>Harore.CG.MTP2014.S83.g12848.02.p
MRGCRVGTSVDHRNVKGGTRAFAKNENVMDYRNIGIMMYGLAISVNIVFVTSFSFADGIV
IAYDHYNGTEEFEDIESTFGSSIPDNGMLGVLVRAEPHDGCQPLKPPPYPSGFNQHNVTL
ASFALIVRGNCEFGAKILNAQNSGYLAAVVYNDKSDFLIKMSSSISGITIPSVFVGITAG
ALLNSSYLYDREGQPYIQLYEGSINPLEYYLIPFVIVLAVCFVSLLCFMIIKCCRDRRRQ
RRGRLSLERLKKLPVKNFEKGDEYDVCAICLDDYEEGDKLRILPCAHAYHCKCVDPWLTS
SKRICPLCKRRVLSDDEDSSSSEEDDSDDERTPLVQTSTASSPNSSLFATGFSRNNPIIR
AIARQNRRASTSSTETVSTSTSSDEEQQMSSIRISTSTSRSTGLSLPQTSDGYQSQRLSA
TPILVDTVRVYPSPVDDNEEDVHVFVTGNRVSESSITVISECDSPSSSISRTPEEHSYNS
MDFHSLDDNSLAPQDNTLSEPYSDGNESDIQDDIIVIAGGK
Nucleotide sequence
Length: 1,566
>Harore.CG.MTP2014.S83.g12848.02.t
ATGCGCGGGTGTAGAGTGGGTACCTCTGTGGATCATCGTAATGTAAAAGGTGGTACCCGG
GCGTTTGCGAAAAACGAAAACGTCATGGATTACCGTAACATCGGAATTATGATGTACGGA
TTGGCGATTTCCGTCAACATAGTTTTCGTCACTTCTTTTTCATTTGCGGATGGAATTGTT
ATCGCTTATGATCATTACAACGGAACTGAAGAATTTGAAGACATAGAATCGACATTTGGT
TCTTCCATTCCTGATAACGGAATGTTGGGAGTTTTAGTTCGAGCAGAGCCTCATGATGGT
TGTCAGCCATTGAAACCTCCGCCTTACCCGAGCGGATTTAATCAACATAACGTAACACTG
GCATCATTTGCACTGATTGTGAGAGGGAACTGTGAATTTGGGGCAAAGATCCTCAATGCA
CAAAACTCTGGTTATTTAGCAGCTGTAGTCTACAATGACAAATCTGATTTCCTAATAAAA
ATGAGTTCATCCATCAGTGGAATAACCATCCCATCTGTCTTTGTTGGAATAACAGCGGGT
GCCCTTCTGAACTCATCATATCTTTATGACAGAGAGGGTCAACCTTACATTCAATTGTAT
GAGGGTTCGATCAACCCGCTCGAATATTATCTCATACCATTCGTGATTGTATTAGCAGTT
TGCTTTGTATCTTTATTATGTTTTATGATTATTAAATGCTGTCGAGACAGAAGGCGGCAA
CGTAGAGGACGACTCTCGCTAGAGAGACTTAAAAAACTTCCTGTTAAAAACTTTGAGAAA
GGTGATGAATACGATGTTTGTGCAATATGTTTGGATGATTATGAAGAGGGAGACAAATTA
AGAATATTGCCTTGTGCGCATGCATATCACTGCAAATGTGTAGACCCATGGCTCACAAGC
AGTAAAAGAATTTGCCCCCTTTGCAAGCGCCGAGTTTTGAGTGATGATGAAGACAGTTCT
TCTTCTGAGGAGGATGACAGCGATGATGAAAGAACTCCTCTAGTCCAAACATCCACAGCT
TCCTCTCCAAATTCCTCCCTTTTTGCAACTGGATTCAGCAGAAATAATCCAATAATCAGA
GCAATTGCAAGACAAAATCGAAGAGCAAGTACTTCCTCAACAGAAACAGTCAGCACTTCG
ACATCATCAGATGAGGAACAGCAGATGTCTTCTATCAGAATATCAACAAGTACTTCTCGC
AGCACTGGACTCTCACTGCCGCAGACATCAGATGGTTATCAATCTCAGAGACTGTCCGCC
ACACCGATACTGGTCGATACCGTCCGAGTATATCCATCTCCGGTTGACGATAACGAGGAA
GATGTGCATGTTTTTGTAACAGGAAATCGTGTTTCAGAGTCATCAATTACTGTGATTTCG
GAATGTGATTCACCATCGTCAAGTATCAGTAGAACGCCAGAGGAACATTCATACAATTCG
ATGGATTTTCATAGCCTTGATGACAATTCGTTGGCACCGCAAGATAACACACTCTCGGAA
CCATATTCTGATGGTAACGAAAGTGATATTCAAGACGATATCATTGTTATTGCTGGCGGT
AAGTGA
| Pfam |
PA_domain (IPR003137) - T[92-182] 1.0E-6 |
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[244-319] 1.8E-19 |
| SMART |
Znf_RING-CH (IPR011016) - T[266-309] 0.0067 |
| Pfam |
Znf_RING (IPR001841) - T[266-309] 7.9E-13 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[267-309] 12.711 |
| SMART |
Znf_RING (IPR001841) - T[267-308] 9.5E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RNF13_HUMAN | 41.779 % | 261 | 9.61E-83 |
| RN167_HUMAN | 38.462 % | 216 | 1.48E-65 |
| ZNRF4_HUMAN | 33.818 % | 142 | 2.46E-37 |