- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'KH2012:KH.C3.151.v1....' >
- Transcript 'Moocci.CG.ELv1_2.S57...' >
- Transcript 'Harore.CG.MTP2014.S8...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S83.g12848.01.t
Possible name(s)
RNF13; RNF167; ZNRF4
Gene model
Location
S83 [86,365 / 96,123]
Amino acid sequence
Length: 519
>Harore.CG.MTP2014.S83.g12848.01.p
MRGCRVGTSVDHRNVKGGTRAFAKNENVMDYRNIGIMMYGLAISVNIVFVTSFSFADGIV
IAYDHYNGTEEFEDIESTFGSSIPDNGMLGVLVRAEPHDGCQPLKPPPYPSGFNQHNVTL
ASFALIVRGNCEFGAKILNAQNSGYLAAVVYNDKSDFLIKMSSSISGITIPSVFVGITAG
ALLNSSYLYDREASIVLSPDIPFTLVHEVFLVLTVLGTSLCIVAIMRIIKCCRDRRRQRR
GRLSLERLKKLPVKNFEKGDEYDVCAICLDDYEEGDKLRILPCAHAYHCKCVDPWLTSSK
RICPLCKRRVLSDDEDSSSSEEDDSDDERTPLVQTSTASSPNSSLFATGFSRNNPIIRAI
ARQNRRASTSSTETVSTSTSSDEEQQMSSIRISTSTSRSTGLSLPQTSDGYQSQRLSATP
ILVDTVRVYPSPVDDNEEDVHVFVTGNRVSESSITVISECDSPSSSISRTPEEHSYNSMD
FHSLDDNSLAPQDNTLSEPYSDGNESDIQDDIIVIAGGK
Nucleotide sequence
Length: 1,560
>Harore.CG.MTP2014.S83.g12848.01.t
ATGCGCGGGTGTAGAGTGGGTACCTCTGTGGATCATCGTAATGTAAAAGGTGGTACCCGG
GCGTTTGCGAAAAACGAAAACGTCATGGATTACCGTAACATCGGAATTATGATGTACGGA
TTGGCGATTTCCGTCAACATAGTTTTCGTCACTTCTTTTTCATTTGCGGATGGAATTGTT
ATCGCTTATGATCATTACAACGGAACTGAAGAATTTGAAGACATAGAATCGACATTTGGT
TCTTCCATTCCTGATAACGGAATGTTGGGAGTTTTAGTTCGAGCAGAGCCTCATGATGGT
TGTCAGCCATTGAAACCTCCGCCTTACCCGAGCGGATTTAATCAACATAACGTAACACTG
GCATCATTTGCACTGATTGTGAGAGGGAACTGTGAATTTGGGGCAAAGATCCTCAATGCA
CAAAACTCTGGTTATTTAGCAGCTGTAGTCTACAATGACAAATCTGATTTCCTAATAAAA
ATGAGTTCATCCATCAGTGGAATAACCATCCCATCTGTCTTTGTTGGAATAACAGCGGGT
GCCCTTCTGAACTCATCATATCTTTATGACAGAGAAGCGAGCATAGTTCTTTCGCCCGAC
ATTCCATTCACCTTGGTGCATGAAGTTTTTCTTGTCCTAACTGTTCTTGGCACTTCTCTG
TGTATTGTTGCTATTATGAGGATTATTAAATGCTGTCGAGACAGAAGGCGGCAACGTAGA
GGACGACTCTCGCTAGAGAGACTTAAAAAACTTCCTGTTAAAAACTTTGAGAAAGGTGAT
GAATACGATGTTTGTGCAATATGTTTGGATGATTATGAAGAGGGAGACAAATTAAGAATA
TTGCCTTGTGCGCATGCATATCACTGCAAATGTGTAGACCCATGGCTCACAAGCAGTAAA
AGAATTTGCCCCCTTTGCAAGCGCCGAGTTTTGAGTGATGATGAAGACAGTTCTTCTTCT
GAGGAGGATGACAGCGATGATGAAAGAACTCCTCTAGTCCAAACATCCACAGCTTCCTCT
CCAAATTCCTCCCTTTTTGCAACTGGATTCAGCAGAAATAATCCAATAATCAGAGCAATT
GCAAGACAAAATCGAAGAGCAAGTACTTCCTCAACAGAAACAGTCAGCACTTCGACATCA
TCAGATGAGGAACAGCAGATGTCTTCTATCAGAATATCAACAAGTACTTCTCGCAGCACT
GGACTCTCACTGCCGCAGACATCAGATGGTTATCAATCTCAGAGACTGTCCGCCACACCG
ATACTGGTCGATACCGTCCGAGTATATCCATCTCCGGTTGACGATAACGAGGAAGATGTG
CATGTTTTTGTAACAGGAAATCGTGTTTCAGAGTCATCAATTACTGTGATTTCGGAATGT
GATTCACCATCGTCAAGTATCAGTAGAACGCCAGAGGAACATTCATACAATTCGATGGAT
TTTCATAGCCTTGATGACAATTCGTTGGCACCGCAAGATAACACACTCTCGGAACCATAT
TCTGATGGTAACGAAAGTGATATTCAAGACGATATCATTGTTATTGCTGGCGGTAAGTGA
| Pfam |
PA_domain (IPR003137) - T[92-182] 1.0E-6 |
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[242-317] 1.8E-19 |
| SMART |
Znf_RING-CH (IPR011016) - T[264-307] 0.0067 |
| Pfam |
Znf_RING (IPR001841) - T[264-307] 7.9E-13 |
| SMART |
Znf_RING (IPR001841) - T[265-306] 9.5E-8 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[265-307] 12.711 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RNF13_HUMAN | 39.295 % | 244 | 2.52E-76 |
| RN167_HUMAN | 38.047 % | 211 | 1.11E-63 |
| ZNRF4_HUMAN | 36 % | 156 | 1.58E-42 |