- Transcript 'Harore.CG.MTP2014.S8...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S817.g14423.01.t
Possible name(s)
PAX7; VSX1; VSX2
Gene model
Location
S817 [234 / 1,050]
Amino acid sequence
Length: 147
>Harore.CG.MTP2014.S817.g14423.01.p
MSLSCRTIFSGEQIHELEESFKRAHYPDVVAREELAVATKLDEDRIQVWFQNRRAKWRKQ
ENQWGHSSVMAEYGLYGAMVRHSIPLPKSVINAKEGFKNQSFAPWLLEMHNKSLKQRSDD
VNQSQLTMENNNCNFNVASSRSDDLRK
Nucleotide sequence
Length: 444
>Harore.CG.MTP2014.S817.g14423.01.t
ATGTCTCTTTCTTGCAGAACTATTTTTTCCGGGGAACAAATCCATGAATTGGAAGAATCA
TTCAAACGCGCTCACTATCCCGATGTCGTTGCGCGGGAAGAACTTGCAGTCGCCACCAAG
CTTGATGAGGATCGGATTCAAGTGTGGTTTCAAAACAGAAGAGCAAAATGGCGCAAACAG
GAGAACCAATGGGGACACAGCAGCGTCATGGCGGAATACGGACTCTATGGCGCCATGGTG
CGGCACTCGATTCCGCTACCGAAGAGTGTGATCAATGCGAAAGAGGGATTCAAGAATCAG
TCATTTGCTCCGTGGCTACTCGAGATGCATAACAAGTCGTTGAAACAAAGGTCTGATGAC
GTCAACCAATCGCAACTAACGATGGAAAATAATAACTGTAACTTCAACGTTGCTTCTTCG
CGAAGCGATGATTTAAGAAAATGA
| SMART |
Homeobox_dom (IPR001356) - T[2-64] 1.5E-23 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[5-64] 4.06E-23 |
| Pfam |
Homeobox_dom (IPR001356) - T[6-59] 4.4E-22 |
| CDD |
Homeobox_dom (IPR001356) - T[6-61] 1.60391E-20 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[6-60] 17.945 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[35-58] . |
| ProSiteProfiles |
CVC (IPR023339) - T[62-115] 18.743 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PAX7_HUMAN | 65.455 % | 87.4 | 6.46E-21 |
| VSX1_HUMAN | 70.642 % | 170 | 7.44E-53 |
| VSX2_HUMAN | 70 % | 162 | 8.39E-50 |
