- Transcript 'KH2012:KH.C2.216.v1....' >
- Transcript 'Cisavi.CG.ENS81.R24....' >
- Transcript 'KH2012:KH.C2.216.v1....' >
- Transcript 'Harore.CG.MTP2014.S7...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S7.g01545.02.t
Possible name(s)
DHX16; DHX37; DHX38
Gene model
Location
S7 [674,477 / 683,296]
Amino acid sequence
Length: 1,132
>Harore.CG.MTP2014.S7.g01545.02.p
MGRSRRKYGKDCNIERKDGLSTTNVNPDTNMLVVAPKSVHKKKEVSKPLTRKLSKKQRKN
LQTVLERKEKKAKRAGLLEDLSKVQVKSSELALMSSIAHLGTKNSSLNLSKRPIPKELKD
EIQKLNSIRGSKKKQKRKKGEDQESSNEDEDEVDSMSLSSDEDIAEEKTDADGISEDTTE
KENVKTENESKIVSVPKDSSESGQETKLAVAPYKMSYVPVDRESEIQEARLRLPILAEEQ
VIMESITDNPAVVICGETGSGKTTQVPQFLFEAGFAKEGMIGVTEPRRVAAISMAKRVAK
EMNLGSDRVSYQIRYEGNVTASTDIKFMTDGVLLREVQNDFMLSKYSAIVVDEAHERSVF
TDVLIGLLSRIVPLRNKRGKPLRLIIMSATLRVQDFTENERLFKISPPVIKIDTRQYPVT
IHFNKKTPMADDQSRPYIKEAYNKICKINRTLPAGGILVFVTGQQEVHLLCKMLKTTFPY
TGLTSANVKENESSADKDETEEKIHNSAEEGHKELPEIDISKYSTIPEEEQKMEVLETDI
EEKDAICGISDSDDCEELDIDNEEFGEDIDTTIPMHVLPMYSLLASSRQQEVFKSPPAGC
RLCVVATNVAETSLTIPGIKYVVDTGKVKTRLFDKVTGISSFQITWISKASADQRAGRSG
RECPGHTYRLYSSAVFQDFKEFSAAEIESRPVSDLVLQMKQINIDRVINFPFPTPPSAES
LKAAEDLLLSLGAVRAPDRIQHSSKVLGSHITDLGRTMASFPVHPRFGKMLATATAKEHK
ELLPYVIAIVASLSVRHLSARLKHLKSLWAGGSNLNSRAFGDLMVLLGAVGSAEFSGLTP
QFCIRNCLRYKAMLEIRKLRSQLTNVVNVLDPESELFLDSKMIPPTDLQIKLLRQIVLSA
VGDHVARKIPDNQVKSSGDASEVKQYIGGYITLLMDEPAFIHPSSIIVCESELPEYVVFQ
EIIHSNKLYMRGVFAIKKEWLPVLCPQYCTFSKPMDDPKPALDETLSHVQCHAVASYSHL
RWPLGVAVIEYPHGIDRYKWFARFLLEKLILPALPTRFSGLLSLPEIMTKSWANLQPRTE
SLLNALLRKRVDAKEKLVTVWKEENTYLLTEFKEWLPESLRADVANYWPPKL
Nucleotide sequence
Length: 3,399
>Harore.CG.MTP2014.S7.g01545.02.t
ATGGGTCGTTCTCGTCGAAAATACGGTAAAGATTGTAACATCGAACGGAAAGATGGATTA
TCAACTACCAACGTTAATCCTGACACAAACATGCTTGTTGTTGCTCCTAAAAGTGTCCAC
AAAAAAAAGGAAGTTTCCAAACCCCTAACTAGGAAATTGAGCAAAAAACAAAGAAAAAAT
CTGCAGACTGTGTTAGAACGAAAAGAAAAGAAAGCAAAGCGTGCAGGATTGCTTGAAGAC
CTTTCTAAAGTTCAAGTCAAGTCTTCTGAACTTGCTCTTATGTCAAGCATTGCTCACCTA
GGAACGAAAAACTCCTCCCTTAATCTCTCAAAACGACCTATTCCTAAAGAACTGAAGGAT
GAGATCCAAAAATTAAATAGCATACGTGGATCTAAAAAGAAGCAGAAGAGGAAGAAAGGA
GAGGATCAAGAATCAAGTAATGAAGATGAGGATGAAGTTGACAGCATGTCGCTTTCATCA
GATGAAGATATAGCTGAAGAGAAAACTGATGCTGACGGTATTAGCGAAGATACTACAGAA
AAAGAGAATGTTAAAACCGAAAACGAATCGAAGATTGTATCAGTGCCAAAAGATAGTTCT
GAATCAGGGCAAGAAACTAAACTTGCCGTGGCTCCTTACAAGATGTCCTATGTTCCTGTT
GACAGGGAATCGGAAATACAAGAAGCTAGGTTGAGACTCCCTATTCTTGCTGAAGAGCAG
GTCATTATGGAATCGATCACAGACAATCCAGCAGTTGTCATATGCGGTGAAACAGGATCT
GGAAAGACGACTCAAGTTCCTCAATTTCTGTTTGAGGCTGGATTTGCAAAAGAAGGAATG
ATTGGCGTCACCGAACCGAGGCGGGTAGCAGCGATTAGCATGGCTAAGAGGGTTGCGAAA
GAAATGAATCTTGGTTCTGACAGAGTTTCATATCAGATAAGATATGAAGGCAATGTAACT
GCATCTACTGACATCAAATTCATGACTGATGGTGTGCTGTTGCGAGAAGTTCAGAACGAT
TTCATGCTGTCCAAATACTCGGCCATAGTAGTGGATGAAGCACATGAAAGAAGCGTATTT
ACTGACGTTCTAATAGGTCTTTTGTCTAGGATAGTACCATTAAGAAACAAGAGAGGGAAA
CCTTTGCGTCTTATTATCATGTCTGCTACGTTGCGTGTCCAAGACTTCACAGAGAATGAA
AGACTCTTTAAAATCTCACCACCGGTGATCAAGATAGATACCAGACAATATCCAGTGACA
ATTCACTTCAATAAAAAGACTCCAATGGCCGATGACCAAAGCAGACCCTACATTAAAGAG
GCGTACAATAAGATTTGTAAAATCAATCGTACGTTGCCAGCTGGAGGAATTTTGGTTTTT
GTCACTGGCCAACAGGAGGTTCACTTGTTATGCAAAATGTTAAAAACAACATTTCCCTAC
ACTGGTCTAACCAGTGCGAATGTGAAAGAGAATGAGAGCTCTGCGGACAAAGATGAAACG
GAGGAAAAGATTCACAATTCTGCCGAAGAAGGTCACAAAGAACTTCCAGAGATTGATATC
AGCAAATATAGTACTATTCCTGAAGAGGAACAAAAGATGGAGGTTTTAGAAACTGACATA
GAAGAAAAAGATGCTATTTGTGGAATCTCGGATTCTGATGATTGTGAAGAACTTGATATT
GACAACGAGGAGTTTGGCGAAGATATTGATACGACTATACCAATGCATGTTCTCCCAATG
TATTCTCTTTTAGCGTCCTCAAGACAGCAAGAAGTGTTTAAATCACCACCTGCTGGCTGT
AGATTGTGTGTCGTGGCTACCAATGTGGCAGAAACCTCTCTCACAATTCCAGGAATCAAA
TACGTCGTAGACACGGGCAAAGTAAAAACAAGACTGTTCGACAAGGTAACAGGGATTTCT
TCATTCCAAATCACATGGATTTCTAAAGCTTCGGCTGACCAGAGAGCAGGACGATCTGGA
AGGGAATGCCCAGGGCATACCTATAGATTGTATTCATCTGCTGTTTTCCAAGATTTCAAA
GAATTTTCAGCTGCTGAGATCGAGTCAAGGCCAGTTTCAGATCTAGTACTTCAAATGAAA
CAAATAAACATCGACAGAGTCATAAATTTTCCATTTCCAACACCACCATCTGCTGAATCT
CTAAAAGCAGCTGAAGACCTATTATTATCATTAGGTGCCGTGAGAGCACCAGATAGAATA
CAACATTCGAGTAAAGTGTTAGGTAGTCACATCACAGACCTGGGTCGCACCATGGCGTCC
TTTCCTGTTCATCCAAGATTTGGGAAGATGCTTGCAACAGCCACCGCAAAGGAGCATAAA
GAACTTTTACCATATGTTATTGCGATCGTGGCATCACTATCAGTTCGGCATTTATCAGCA
CGCCTTAAACACTTGAAGTCACTTTGGGCCGGTGGATCCAATTTAAATTCACGAGCCTTC
GGTGATTTGATGGTACTGTTAGGTGCTGTTGGCTCGGCTGAATTCTCTGGTCTTACTCCA
CAGTTTTGCATTAGAAACTGTCTCAGGTATAAAGCGATGCTCGAAATTCGGAAATTAAGG
TCACAGTTGACAAATGTTGTCAATGTCTTGGATCCAGAGTCTGAATTATTTCTTGACAGT
AAAATGATTCCTCCAACTGATCTACAGATAAAACTCTTGAGGCAGATCGTGCTTTCAGCC
GTGGGCGATCATGTTGCGCGAAAGATTCCAGATAATCAAGTCAAAAGCAGCGGTGATGCT
TCCGAGGTTAAGCAGTATATCGGAGGATACATCACACTTCTGATGGATGAGCCTGCTTTT
ATCCACCCTTCTTCGATTATTGTTTGTGAATCGGAACTGCCGGAATATGTAGTCTTCCAA
GAAATTATTCATTCAAACAAATTATACATGAGAGGTGTGTTTGCGATAAAAAAGGAATGG
CTTCCCGTCCTTTGTCCTCAGTATTGTACATTTTCAAAACCAATGGACGATCCCAAGCCT
GCCCTGGATGAAACCTTATCTCATGTACAATGCCATGCCGTGGCTTCTTACAGCCATCTG
CGTTGGCCGCTTGGGGTGGCTGTTATTGAATATCCTCATGGCATCGATAGATACAAATGG
TTTGCTCGCTTCTTGCTTGAAAAGCTGATTTTACCCGCACTCCCTACTCGGTTCAGCGGT
TTGTTGTCACTTCCAGAGATTATGACGAAGTCTTGGGCCAACTTACAACCGCGAACTGAA
TCTTTACTAAATGCACTCTTGAGAAAAAGAGTTGATGCAAAAGAGAAGCTTGTTACTGTT
TGGAAAGAGGAGAATACTTATTTATTAACTGAATTCAAGGAATGGTTACCAGAATCACTT
CGTGCTGATGTTGCTAATTACTGGCCACCGAAGTTATGA
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[230-477] 2.91E-84 - T[568-860] 2.91E-84 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[231-422] 5.4E-28 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[242-395] 3.0E-10 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[243-409] 21.034 |
| ProSitePatterns |
DNA/RNA_helicase_DEAH_CS (IPR002464) - T[347-356] . |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[528-703] 11.535 |
| SMART |
Helicase_C (IPR001650) - T[564-663] 1.0E-11 |
| Pfam |
Helicase_C (IPR001650) - T[574-661] 2.6E-8 |
| SMART |
Helicase-assoc_dom (IPR007502) - T[723-827] 3.1E-18 |
| Pfam |
Helicase-assoc_dom (IPR007502) - T[724-804] 1.0E-14 |
| Pfam |
DUF1605 (IPR011709) - T[893-988] 4.7E-17 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DHX37_HUMAN | 49.055 % | 1010 | 0 |
| PRP16_HUMAN | 36.339 % | 194 | 1.72E-50 |
| DHX40_HUMAN | 41.633 % | 191 | 3.33E-50 |