- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Moocul.CG.ELv1_2.S26...' >
- Transcript 'Haaura.CG.MTP2014.S1...' >
- Transcript 'Phmamm.CG.MTP2014.S5...' >
- Transcript 'Harore.CG.MTP2014.S7...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S7.g01545.01.t
Possible name(s)
DHX16; DHX37; DHX38
Gene model
Location
S7 [674,477 / 683,296]
Amino acid sequence
Length: 1,134
>Harore.CG.MTP2014.S7.g01545.01.p
MGRSRRKYGKDCNIERKDGLSTTNVNPDTNMLVVAPKSVHKKKEVSKPLTRKLSKKQRKN
LQTVLERKEKKAKRAGLLEDLSKVQVKSSELALMSSIAHLGTKNSSLNLSKRPIPKELKD
EIQKLNSIRGSKKKQKRKKGEDQDQESSNEDEDEVDSMSLSSDEDIAEEKTDADGISEDT
TEKENVKTENESKIVSVPKDSSESGQETKLAVAPYKMSYVPVDRESEIQEARLRLPILAE
EQVIMESITDNPAVVICGETGSGKTTQVPQFLFEAGFAKEGMIGVTEPRRVAAISMAKRV
AKEMNLGSDRVSYQIRYEGNVTASTDIKFMTDGVLLREVQNDFMLSKYSAIVVDEAHERS
VFTDVLIGLLSRIVPLRNKRGKPLRLIIMSATLRVQDFTENERLFKISPPVIKIDTRQYP
VTIHFNKKTPMADDQSRPYIKEAYNKICKINRTLPAGGILVFVTGQQEVHLLCKMLKTTF
PYTGLTSANVKENESSADKDETEEKIHNSAEEGHKELPEIDISKYSTIPEEEQKMEVLET
DIEEKDAICGISDSDDCEELDIDNEEFGEDIDTTIPMHVLPMYSLLASSRQQEVFKSPPA
GCRLCVVATNVAETSLTIPGIKYVVDTGKVKTRLFDKVTGISSFQITWISKASADQRAGR
SGRECPGHTYRLYSSAVFQDFKEFSAAEIESRPVSDLVLQMKQINIDRVINFPFPTPPSA
ESLKAAEDLLLSLGAVRAPDRIQHSSKVLGSHITDLGRTMASFPVHPRFGKMLATATAKE
HKELLPYVIAIVASLSVRHLSARLKHLKSLWAGGSNLNSRAFGDLMVLLGAVGSAEFSGL
TPQFCIRNCLRYKAMLEIRKLRSQLTNVVNVLDPESELFLDSKMIPPTDLQIKLLRQIVL
SAVGDHVARKIPDNQVKSSGDASEVKQYIGGYITLLMDEPAFIHPSSIIVCESELPEYVV
FQEIIHSNKLYMRGVFAIKKEWLPVLCPQYCTFSKPMDDPKPALDETLSHVQCHAVASYS
HLRWPLGVAVIEYPHGIDRYKWFARFLLEKLILPALPTRFSGLLSLPEIMTKSWANLQPR
TESLLNALLRKRVDAKEKLVTVWKEENTYLLTEFKEWLPESLRADVANYWPPKL
Nucleotide sequence
Length: 3,405
>Harore.CG.MTP2014.S7.g01545.01.t
ATGGGTCGTTCTCGTCGAAAATACGGTAAAGATTGTAACATCGAACGGAAAGATGGATTA
TCAACTACCAACGTTAATCCTGACACAAACATGCTTGTTGTTGCTCCTAAAAGTGTCCAC
AAAAAAAAGGAAGTTTCCAAACCCCTAACTAGGAAATTGAGCAAAAAACAAAGAAAAAAT
CTGCAGACTGTGTTAGAACGAAAAGAAAAGAAAGCAAAGCGTGCAGGATTGCTTGAAGAC
CTTTCTAAAGTTCAAGTCAAGTCTTCTGAACTTGCTCTTATGTCAAGCATTGCTCACCTA
GGAACGAAAAACTCCTCCCTTAATCTCTCAAAACGACCTATTCCTAAAGAACTGAAGGAT
GAGATCCAAAAATTAAATAGCATACGTGGATCTAAAAAGAAGCAGAAGAGGAAGAAAGGA
GAGGATCAGGATCAAGAATCAAGTAATGAAGATGAGGATGAAGTTGACAGCATGTCGCTT
TCATCAGATGAAGATATAGCTGAAGAGAAAACTGATGCTGACGGTATTAGCGAAGATACT
ACAGAAAAAGAGAATGTTAAAACCGAAAACGAATCGAAGATTGTATCAGTGCCAAAAGAT
AGTTCTGAATCAGGGCAAGAAACTAAACTTGCCGTGGCTCCTTACAAGATGTCCTATGTT
CCTGTTGACAGGGAATCGGAAATACAAGAAGCTAGGTTGAGACTCCCTATTCTTGCTGAA
GAGCAGGTCATTATGGAATCGATCACAGACAATCCAGCAGTTGTCATATGCGGTGAAACA
GGATCTGGAAAGACGACTCAAGTTCCTCAATTTCTGTTTGAGGCTGGATTTGCAAAAGAA
GGAATGATTGGCGTCACCGAACCGAGGCGGGTAGCAGCGATTAGCATGGCTAAGAGGGTT
GCGAAAGAAATGAATCTTGGTTCTGACAGAGTTTCATATCAGATAAGATATGAAGGCAAT
GTAACTGCATCTACTGACATCAAATTCATGACTGATGGTGTGCTGTTGCGAGAAGTTCAG
AACGATTTCATGCTGTCCAAATACTCGGCCATAGTAGTGGATGAAGCACATGAAAGAAGC
GTATTTACTGACGTTCTAATAGGTCTTTTGTCTAGGATAGTACCATTAAGAAACAAGAGA
GGGAAACCTTTGCGTCTTATTATCATGTCTGCTACGTTGCGTGTCCAAGACTTCACAGAG
AATGAAAGACTCTTTAAAATCTCACCACCGGTGATCAAGATAGATACCAGACAATATCCA
GTGACAATTCACTTCAATAAAAAGACTCCAATGGCCGATGACCAAAGCAGACCCTACATT
AAAGAGGCGTACAATAAGATTTGTAAAATCAATCGTACGTTGCCAGCTGGAGGAATTTTG
GTTTTTGTCACTGGCCAACAGGAGGTTCACTTGTTATGCAAAATGTTAAAAACAACATTT
CCCTACACTGGTCTAACCAGTGCGAATGTGAAAGAGAATGAGAGCTCTGCGGACAAAGAT
GAAACGGAGGAAAAGATTCACAATTCTGCCGAAGAAGGTCACAAAGAACTTCCAGAGATT
GATATCAGCAAATATAGTACTATTCCTGAAGAGGAACAAAAGATGGAGGTTTTAGAAACT
GACATAGAAGAAAAAGATGCTATTTGTGGAATCTCGGATTCTGATGATTGTGAAGAACTT
GATATTGACAACGAGGAGTTTGGCGAAGATATTGATACGACTATACCAATGCATGTTCTC
CCAATGTATTCTCTTTTAGCGTCCTCAAGACAGCAAGAAGTGTTTAAATCACCACCTGCT
GGCTGTAGATTGTGTGTCGTGGCTACCAATGTGGCAGAAACCTCTCTCACAATTCCAGGA
ATCAAATACGTCGTAGACACGGGCAAAGTAAAAACAAGACTGTTCGACAAGGTAACAGGG
ATTTCTTCATTCCAAATCACATGGATTTCTAAAGCTTCGGCTGACCAGAGAGCAGGACGA
TCTGGAAGGGAATGCCCAGGGCATACCTATAGATTGTATTCATCTGCTGTTTTCCAAGAT
TTCAAAGAATTTTCAGCTGCTGAGATCGAGTCAAGGCCAGTTTCAGATCTAGTACTTCAA
ATGAAACAAATAAACATCGACAGAGTCATAAATTTTCCATTTCCAACACCACCATCTGCT
GAATCTCTAAAAGCAGCTGAAGACCTATTATTATCATTAGGTGCCGTGAGAGCACCAGAT
AGAATACAACATTCGAGTAAAGTGTTAGGTAGTCACATCACAGACCTGGGTCGCACCATG
GCGTCCTTTCCTGTTCATCCAAGATTTGGGAAGATGCTTGCAACAGCCACCGCAAAGGAG
CATAAAGAACTTTTACCATATGTTATTGCGATCGTGGCATCACTATCAGTTCGGCATTTA
TCAGCACGCCTTAAACACTTGAAGTCACTTTGGGCCGGTGGATCCAATTTAAATTCACGA
GCCTTCGGTGATTTGATGGTACTGTTAGGTGCTGTTGGCTCGGCTGAATTCTCTGGTCTT
ACTCCACAGTTTTGCATTAGAAACTGTCTCAGGTATAAAGCGATGCTCGAAATTCGGAAA
TTAAGGTCACAGTTGACAAATGTTGTCAATGTCTTGGATCCAGAGTCTGAATTATTTCTT
GACAGTAAAATGATTCCTCCAACTGATCTACAGATAAAACTCTTGAGGCAGATCGTGCTT
TCAGCCGTGGGCGATCATGTTGCGCGAAAGATTCCAGATAATCAAGTCAAAAGCAGCGGT
GATGCTTCCGAGGTTAAGCAGTATATCGGAGGATACATCACACTTCTGATGGATGAGCCT
GCTTTTATCCACCCTTCTTCGATTATTGTTTGTGAATCGGAACTGCCGGAATATGTAGTC
TTCCAAGAAATTATTCATTCAAACAAATTATACATGAGAGGTGTGTTTGCGATAAAAAAG
GAATGGCTTCCCGTCCTTTGTCCTCAGTATTGTACATTTTCAAAACCAATGGACGATCCC
AAGCCTGCCCTGGATGAAACCTTATCTCATGTACAATGCCATGCCGTGGCTTCTTACAGC
CATCTGCGTTGGCCGCTTGGGGTGGCTGTTATTGAATATCCTCATGGCATCGATAGATAC
AAATGGTTTGCTCGCTTCTTGCTTGAAAAGCTGATTTTACCCGCACTCCCTACTCGGTTC
AGCGGTTTGTTGTCACTTCCAGAGATTATGACGAAGTCTTGGGCCAACTTACAACCGCGA
ACTGAATCTTTACTAAATGCACTCTTGAGAAAAAGAGTTGATGCAAAAGAGAAGCTTGTT
ACTGTTTGGAAAGAGGAGAATACTTATTTATTAACTGAATTCAAGGAATGGTTACCAGAA
TCACTTCGTGCTGATGTTGCTAATTACTGGCCACCGAAGTTATGA
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[232-479] 2.91E-84 - T[570-862] 2.91E-84 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[233-424] 5.4E-28 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[244-397] 3.0E-10 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[245-411] 21.034 |
| ProSitePatterns |
DNA/RNA_helicase_DEAH_CS (IPR002464) - T[349-358] . |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[530-705] 11.535 |
| SMART |
Helicase_C (IPR001650) - T[566-665] 1.0E-11 |
| Pfam |
Helicase_C (IPR001650) - T[576-663] 2.6E-8 |
| SMART |
Helicase-assoc_dom (IPR007502) - T[725-829] 3.1E-18 |
| Pfam |
Helicase-assoc_dom (IPR007502) - T[726-806] 1.0E-14 |
| Pfam |
DUF1605 (IPR011709) - T[895-990] 4.7E-17 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DHX37_HUMAN | 49.235 % | 1009 | 0 |
| PRP16_HUMAN | 36.339 % | 194 | 1.94E-50 |
| DHX40_HUMAN | 41.633 % | 191 | 3.53E-50 |