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TRANSCRIPT CARD

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  1. Molecular Tool 'ciad79a05-MO (Hamada's MO)' > 
  2. Transcript 'Harore.CG.MTP2014.S7...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S76.g07624.01.t

Possible name(s)

GLI3; GLIS1; GLIS3

Gene model

Harore.CG.MTP2014.S76.g07624

Location

S76 [66,989 / 77,170]

Sequences

Amino acid sequence

Length: 945

>Harore.CG.MTP2014.S76.g07624.01.p
LYPPGSAMSTLSGFSGISLFHGISPNGSNFVSPRHSARSGNRGNISQARKRTLSVSPLSI
DGLDLTALIRGSPNALFLASRGSSRGVSPLFGSNINIAGAAGLGVSPGTYGHLSARKSIS
PSSNGSYSRQLLLATPASMILPYTSNHSQHSGMNVSSTDEYLAGAYTNVLDNMEERRLSH
GLSNQLAGYESGIPASYQRTGGNHGRSMSGQSQLIVSTHSDNMAQEHRRGMNEGCNMGIS
SSTMTMYPVDKQQAQSFSVKSEYMPSSDIGFSQHQTLTNTSSPYLTAPPPPYTNTHPSHL
SARTILPQYSSPKHASLAYQQSIGNMNTFRNANAHYRPLNNVHYGTNVATSTTSEQRLLG
HVNIPGHFHLPAKVEDGNDNSKNLANPLQGGRWICRWIDCNHLFKDQDELVKHIEKMHID
QRKGDEFTCYWFSCPRNFKPFNARYKLLIHMRVHSGERPNKCTFDGCNKAFSRLENLKIH
LRSHTGERPYVCQHAGCSKAFSNSSDRAKHQRTHLDTMQILDGFLFCLKKPYACQIPGCN
KRYTDPSSLRKHFKAHTSKEQQARKKRRGMEDRELGECLVIHPLQLQNHGEPYYNETNTG
MFVSTQDHAGSSMPNLPQPPSVNQLTQHLGRNALPAIGNNVHHFSNIQPHEENVIQTAPP
MSVDKNLLNQFRPISRSKMSDDLQQQHLHHSSYNRNHTSSVDMDVSHLRPPCTTIDSTPI
SSSTQQMTSQQEELSPQQLMPPPPPPPPLSHHQPVVAHMHTIDANGHIQPVHPTLSLPTP
PSPLEDASRHIPHPPLDRSGSRSSQRDTSMRSYPRYSSSRDYREGFIPQPPEHPPSSNSV
ASSRARSVSSHSRLQSTSPNRISPMYFSGDHAGAIGMTYDAVQRAISARSNLSIDRGLEI
PPGTPYSIVTNESMRSHDSTGRIKLTAIDRCPSQMSMVYADGPAM

Nucleotide sequence

Length: 4,247

>Harore.CG.MTP2014.S76.g07624.01.t
TCTCTATCCGCCGGGCAGCGCAATGTCCACTTTAAGTGGCTTCAGTGGAATCTCGTTATT
CCACGGAATATCGCCGAACGGTTCCAATTTTGTCAGTCCGCGGCATTCAGCGAGATCTGG
AAACAGGGGAAATATTTCTCAAGCTCGAAAGCGAACTTTATCAGTATCACCTCTGTCCAT
CGACGGACTAGATTTGACAGCATTAATTAGGGGCTCTCCGAACGCTCTTTTCCTCGCGTC
GCGTGGTTCCTCCAGGGGCGTATCGCCCTTGTTTGGCAGCAATATTAACATTGCCGGCGC
AGCTGGTCTTGGTGTCTCCCCGGGAACTTACGGACATTTGTCTGCACGAAAGAGCATCAG
TCCCTCTTCCAACGGCTCCTATTCCCGCCAATTGCTTCTTGCTACCCCAGCGAGCATGAT
TTTGCCTTACACCAGCAATCACTCGCAACATTCCGGTATGAACGTCTCGTCGACTGACGA
ATACCTCGCAGGTGCTTATACGAATGTCTTGGATAACATGGAGGAAAGGCGACTTTCCCA
CGGACTTAGTAATCAGCTAGCCGGGTATGAATCTGGCATCCCCGCAAGTTATCAAAGAAC
TGGTGGTAACCACGGTAGAAGTATGTCGGGCCAGTCTCAATTGATTGTATCAACACATAG
CGATAATATGGCTCAGGAGCACCGAAGGGGAATGAACGAAGGGTGTAATATGGGTATTAG
TAGTTCAACCATGACAATGTATCCTGTAGATAAACAGCAAGCACAAAGCTTTTCAGTCAA
ATCCGAATACATGCCATCCTCCGATATCGGATTTTCACAACACCAAACTCTAACAAACAC
ATCGTCTCCCTACTTAACCGCGCCACCCCCACCCTATACCAATACACATCCCAGTCACTT
GTCCGCTCGTACCATACTGCCACAATACTCTTCACCCAAACACGCTAGTCTGGCCTACCA
GCAAAGCATTGGCAACATGAACACCTTTCGTAATGCGAATGCTCACTACCGCCCTCTGAA
TAACGTACATTACGGTACGAATGTTGCTACCAGCACGACTTCCGAACAACGGCTACTTGG
CCACGTCAACATTCCGGGACATTTTCATCTTCCCGCTAAGGTGGAAGACGGCAACGATAA
CAGCAAAAATCTTGCAAATCCTTTACAAGGTGGAAGGTGGATCTGCAGATGGATTGACTG
CAATCACCTTTTCAAGGATCAAGATGAACTCGTGAAGCACATTGAGAAAATGCACATAGA
CCAAAGAAAGGGAGATGAGTTTACTTGTTACTGGTTTTCTTGTCCAAGAAACTTTAAACC
TTTCAACGCCAGATATAAATTGCTTATACACATGCGGGTGCATTCGGGAGAACGGCCAAA
TAAATGCACGTTTGATGGGTGTAACAAGGCTTTCTCCCGACTTGAAAACTTGAAGATTCA
CCTTCGTTCTCACACAGGGGAACGGCCGTACGTATGTCAACACGCTGGTTGTAGCAAGGC
CTTCAGCAATTCTTCGGATAGAGCAAAACATCAACGGACACATCTCGATACTATGCAAAT
ATTAGATGGTTTTTTGTTTTGTTTAAAGAAACCTTACGCCTGTCAGATACCCGGATGTAA
TAAAAGATACACAGATCCGTCGTCCTTGAGGAAACACTTCAAAGCACACACCAGTAAAGA
ACAACAAGCAAGGAAGAAGAGACGAGGAATGGAAGACAGAGAACTAGGCGAATGTTTAGT
TATCCATCCTCTCCAGCTGCAGAATCATGGTGAACCATACTACAATGAAACTAATACAGG
AATGTTTGTTTCAACCCAAGATCATGCTGGATCTTCCATGCCCAATCTTCCTCAGCCTCC
TTCTGTTAATCAACTTACTCAGCATCTTGGTCGTAATGCCCTCCCTGCTATAGGTAACAA
CGTTCATCACTTCTCCAACATTCAGCCACATGAAGAAAATGTAATCCAAACCGCTCCTCC
AATGTCGGTAGACAAAAATCTTCTTAATCAGTTTCGTCCGATCAGTAGATCTAAAATGTC
AGATGATTTGCAGCAGCAACATCTTCATCACAGTTCATACAACAGGAATCATACTTCATC
TGTCGACATGGATGTCTCCCACTTACGTCCTCCTTGTACAACAATCGACAGCACACCAAT
ATCTTCCAGTACACAGCAGATGACATCTCAGCAGGAGGAACTATCCCCTCAACAATTAAT
GCCTCCTCCTCCACCCCCTCCACCTTTATCCCATCATCAGCCTGTCGTTGCACACATGCA
CACAATCGACGCCAACGGACATATTCAGCCAGTCCATCCTACGCTTTCTCTTCCTACACC
GCCTTCACCCCTGGAGGATGCTTCGCGACATATCCCTCATCCGCCATTGGATCGCTCGGG
ATCGAGGTCTTCTCAACGAGACACGTCGATGAGATCGTATCCACGTTACTCTTCTTCCCG
TGATTATCGTGAAGGCTTTATTCCTCAGCCTCCGGAGCATCCACCGTCCTCCAATTCCGT
GGCGTCTTCGAGAGCACGATCCGTATCTTCACATTCCAGATTGCAGTCGACAAGTCCTAA
CCGTATATCTCCTATGTACTTCAGCGGAGATCATGCTGGTGCTATTGGGATGACGTATGA
CGCCGTTCAAAGAGCAATTTCTGCTCGGAGTAATCTCAGCATTGACCGAGGCTTGGAAAT
TCCGCCAGGCACGCCTTACAGCATAGTAACGAATGAGTCCATGCGAAGCCACGACTCGAC
TGGTCGCATAAAACTTACTGCGATTGACCGATGCCCCAGCCAAATGTCAATGGTTTATGC
TGATGGTCCAGCCATGTGAATGGTTCATAACGATATACACGACAGCTTATGTTCATTTGA
GCAAGTGTTACTGTCGTATTGTATAGTCTAAGCTGAGTTATCTAGCCAAATTAAAGAACC
ATGGAGAGTCAGAAAATCGCTTAGCTGAGACCGAGACCAGTTATGGAATATGAGGAAAAC
ATTTTTTTGAAAAGAACATTTTATTGTTTTTCGCTGATATTCCGTTAGTAAATTATTGAA
GAACCGCCAGGTAACTATGGATTTCATCTGCATCAAAACAAATGAAATGAAAATATTTCT
CATAAGTTATCTTCTACCAGAGTGTCTACTACGATACATATGAGATATTGAACTGTTTAT
GAAATATATGCTTGTTCAAATCTCCCTACCATCCGGTAATATTGGATTCTAAGTAATGGG
TTATGGGAAATTCAAATTCCTTATATGAAATTGTAGAATATCCACACCTGAATTCATGAA
ATATCCACCTTATTCTACTCCCTTTTCCAAAACTGATGTCAATTTCAGTCGATATTCAAA
TCCTGTGGATTTTTCATGAGAATCAAATTACGTTATTTTCCATCCTTTTCTATCATTCCA
CTGTACTCGTATCCTTATTTTCCCGTTTTTGCGAAAATCACGACTTCAACCATTCCTTCC
TTCTTAGTTCATCCTTCATATGTGTAATAACACCCTTATTCTTCAGTATTTACCTTTCTT
CATCGTATAATTTCATAATTCTAACATTTGTATTAACGTGCCAACAACATTGATGCAATT
CAGAATACCTAATAATTTATTTGCTAGCGTTTTTTTTAAGATTTTAATGTTCTCTGTTCC
GCATGAAATCAGTTCCCGTTCGAGACCTGTGAAGTTCATAATTTTAGTATTGTTTGATTT
TCCAAATTGTTAAACCCGAACCACAGACTTAATGCCACTATGATCAGCCTGTACTTGGTC
AGTTAAGCGTTTCAATGACCAGGACACTTGTTACCCTCAGCATACAGCTCACAGGAGGTA
GTTGTGTTAATTTTGCTCCAGTTTTCCATGATTCTGCTTCTATTATAACTTAGCAGCGAT
CAGAATACATATTTAGTATGTTTTTTCTCCACAATTCTTCTAATTTATTATTTTTTGTCT
CATGTCCAAGCCTGGTGCTGAATAACGTCCTATATGTATTATTGTCATGACTTTTTCGTA
CTAGTACAGTATTTGTTTATTTCTATTCACTTTCGTCAATGATTTCAAATTTGGGGCTCG
CTTTTTCACTGTTCCTTGTGTTTCTTTTGCTCACTTTATATACTAAGCCTACCATGACAG
ACACATTTGTAGGATAATTGAAAAGTCGAACGAGCAGCTTGCTTGTAGACACCATGCTAA
CAGTAGCCAATGATATTTCACTCCAATCCAGTGTATTTCGTGATGGC

InterProScan

SUPERFAMILY
Znf_C2H2_sf (IPR036236) - T[393-423] 1.17E-8 - T[441-497] 4.91E-18 - T[488-516] 7.96E-6 - T[530-557] 1.9E-8
SMART
Znf_C2H2_type (IPR013087) - T[393-418] 0.026 - T[427-454] 11.0 - T[460-484] 0.0018 - T[490-514] 0.0043 - T[532-556] 7.0E-4
ProSiteProfiles
Znf_C2H2_type (IPR013087) - T[393-423] 9.66 - T[432-459] 11.884 - T[460-489] 14.752 - T[490-519] 11.24 - T[532-561] 11.822
ProSitePatterns
Znf_C2H2_type (IPR013087) - T[395-418] . - T[462-484] . - T[492-514] . - T[534-556] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
GLI3_HUMAN 53.299 % 222 1.3E-59
GLIS3_HUMAN 71.859 % 318 1.95E-95
GLIS1_HUMAN 68.966 % 303 1.1E-91