- Transcript 'KH2012:KH.C4.26.v2.A...' >
- Transcript 'Harore.CG.MTP2014.S7...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S73.g13344.01.t
Possible name(s)
DDX18; DDX31; DDX55
Gene model
Location
S73 [8,471 / 11,404]
Amino acid sequence
Length: 781
>Harore.CG.MTP2014.S73.g13344.01.p
MTTETDLSINLVGTDTLEFRKKSKKRFYGKNNFRARKNVKKTQKSGKNVFLVRKKPKTLH
TNHPPQAPVNLESNDLDLKSENSTALHFKSVKVDITTLTEKKTKKRKVDGANDGNKRPKV
KKVAPEPQGINVGHGKVAGKLVKSSLFNQNPEISKVQQPELSSVKEKVFSGKHFSDLNVH
PYLVSYLSEHLKLDNMTLIQQRAIPELLEFKDALIKSQTGSGKTLAYALPVMQGIITIEP
PITRIDGPVALILVPTRELALQSFSLFSKLTRSFCRIVSTWLIGGESKKSEKSRIRKGVN
IIIGTPGRVLDHIQTTTCLSLKNLRWVVFDEADRMLDMGFQKQVDSILEAVRNQTDHKKQ
IILLSATLSEKVERMATLALENPVLINATEDTNDSGISSADGNEETYALPRNLLQYVAVV
PSKLRLVSLVTFLICKQMEASSCKILIFLSSRDSVEFHYHLLKHVMRQPKSQIAQSIPLD
VELDAEEVAELSVFQLHGGMTQNKRESMFNVFGSSQGGILLCTDVAARGLDIPYVDWVIQ
YTSPGSPIDYIHRVGRTARAGRKGQALLFLTPSEARYVSLLTQFNIKVNEMTVDDILHLV
LDPKQKRNKAKTNPRLDNLVKENATSLQNQMEYYVTKNSRIKSLAKNAFASFVRAYATYP
KEMKTIFHVKYLHLGHVVKSFALAEAPTDVVKDLHKSVGHLRINTSFEHRETKASEDMSK
DEAEKKAITVKRKLANKNNRYKKKFQLPSISLEYCFLRSELDIFCPLLKDRERRLFFRVY
D
Nucleotide sequence
Length: 2,346
>Harore.CG.MTP2014.S73.g13344.01.t
ATGACAACTGAAACTGACTTGAGTATTAATCTCGTAGGTACAGATACATTAGAATTCCGA
AAAAAGAGCAAGAAACGATTTTACGGTAAAAATAACTTCCGTGCGCGAAAAAACGTGAAA
AAAACACAAAAATCCGGAAAAAATGTATTTCTGGTTCGCAAGAAACCAAAAACACTACAC
ACAAACCATCCTCCGCAAGCCCCCGTAAATTTAGAGAGCAATGATCTAGATTTGAAAAGT
GAGAACAGCACCGCTTTGCACTTTAAAAGCGTTAAGGTTGATATTACCACCTTGACGGAA
AAGAAGACGAAGAAACGTAAGGTAGATGGGGCCAATGACGGAAATAAAAGACCGAAGGTG
AAAAAAGTAGCACCAGAACCTCAAGGCATAAATGTGGGACATGGTAAAGTTGCAGGGAAA
TTAGTTAAATCATCCCTTTTCAATCAAAATCCTGAAATTTCCAAAGTGCAGCAACCCGAG
CTATCAAGTGTCAAAGAAAAGGTTTTCTCTGGAAAACATTTCTCAGACCTGAATGTACAT
CCTTATTTGGTGTCTTACTTGAGTGAACATTTAAAATTAGATAACATGACCTTGATACAA
CAAAGGGCTATTCCAGAGCTACTCGAATTCAAAGATGCACTGATAAAATCCCAAACAGGT
TCTGGAAAGACGCTCGCCTACGCCCTTCCCGTAATGCAAGGCATTATTACCATTGAACCC
CCGATTACTAGGATAGATGGACCAGTTGCCCTCATACTCGTACCGACAAGAGAACTGGCG
CTCCAGTCATTCAGCCTTTTCAGTAAACTGACAAGGTCTTTTTGTAGAATTGTTTCGACT
TGGCTGATCGGTGGAGAAAGTAAAAAGTCTGAGAAATCTAGAATTCGCAAAGGCGTCAAT
ATCATTATCGGCACTCCGGGAAGGGTACTTGACCACATCCAGACGACTACCTGCTTGTCC
TTGAAAAATTTACGATGGGTCGTGTTCGATGAAGCTGATCGCATGCTTGATATGGGATTT
CAAAAGCAAGTGGATTCTATTCTCGAAGCTGTGAGAAATCAGACAGACCACAAAAAACAA
ATCATTTTGCTGTCAGCCACTCTCTCTGAGAAAGTCGAAAGAATGGCAACACTCGCTCTT
GAAAATCCGGTCCTTATAAATGCAACTGAAGACACCAATGACAGTGGTATATCCTCAGCT
GATGGTAATGAGGAAACGTACGCCCTGCCCCGAAATTTACTTCAGTATGTTGCTGTCGTA
CCGAGTAAACTGAGATTAGTATCGCTGGTTACTTTTCTTATCTGTAAGCAAATGGAAGCC
AGCTCGTGTAAAATCCTAATATTTCTATCCAGTCGGGATTCTGTGGAATTCCACTATCAT
CTTTTAAAACATGTCATGCGCCAGCCCAAATCTCAAATCGCTCAATCGATTCCACTCGAT
GTAGAATTGGATGCTGAAGAAGTGGCTGAACTCAGTGTCTTTCAACTTCATGGTGGCATG
ACACAGAACAAGCGTGAGAGCATGTTCAACGTATTCGGTTCTTCACAGGGTGGAATTTTG
TTGTGTACAGACGTGGCTGCCCGTGGTTTGGATATCCCTTACGTCGATTGGGTGATTCAA
TACACGAGTCCAGGAAGTCCTATTGATTACATACACAGAGTTGGTCGCACAGCTAGGGCT
GGAAGAAAAGGGCAAGCTCTTCTCTTTTTAACACCTTCAGAAGCGAGGTACGTCAGCTTA
CTCACGCAATTCAACATAAAGGTCAATGAGATGACTGTTGACGACATTCTGCACCTTGTT
CTCGACCCAAAACAGAAACGAAACAAGGCTAAAACAAATCCGAGATTGGACAATTTGGTT
AAGGAAAACGCGACTTCGCTTCAAAACCAAATGGAGTATTATGTTACAAAAAACAGTAGA
ATAAAATCCCTGGCAAAGAATGCGTTCGCATCGTTCGTTCGTGCTTACGCAACATACCCC
AAAGAAATGAAAACGATTTTTCATGTAAAATATTTACATCTCGGACACGTGGTCAAAAGT
TTCGCTTTAGCCGAAGCACCGACAGACGTCGTCAAGGACCTTCACAAATCCGTTGGGCAT
CTACGGATAAACACTTCGTTCGAACACAGAGAAACAAAGGCTTCTGAGGACATGTCAAAA
GATGAGGCGGAGAAAAAGGCAATAACTGTAAAGCGGAAACTAGCAAATAAGAATAACAGA
TACAAGAAAAAGTTCCAACTCCCAAGCATATCATTGGAATATTGCTTTTTAAGATCAGAG
CTAGATATTTTCTGTCCACTTTTAAAAGACAGAGAAAGGAGATTATTCTTCAGAGTTTAT
GACTGA
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[172-201] 7.962 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[192-399] 3.3E-45 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[197-374] 2.1E-47 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[204-386] 31.157 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[246-578] 1.31E-62 |
| ProSitePatterns |
RNA-helicase_DEAD-box_CS (IPR000629) - T[328-336] . |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[412-597] 19.462 |
| CDD |
Helicase_C (IPR001650) - T[414-569] 2.10059E-29 |
| Pfam |
Helicase_C (IPR001650) - T[433-561] 2.6E-22 |
| SMART |
Helicase_C (IPR001650) - T[460-561] 3.6E-24 |
| SMART |
DUF4217 (IPR025313) - T[626-691] 6.5E-23 |
| Pfam |
DUF4217 (IPR025313) - T[628-687] 1.1E-15 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX18_HUMAN | 34.99 % | 283 | 4.99E-85 |
| DDX55_HUMAN | 31.599 % | 225 | 3.03E-64 |
| DDX31_HUMAN | 46.975 % | 503 | 5.56E-167 |