- Transcript 'Harore.CG.MTP2014.S7...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S727.g14481.01.t
Possible name(s)
CR1; CSMD3; SVEP1
Gene model
Location
S727 [2,091 / 17,132]
Amino acid sequence
Length: 1,285
>Harore.CG.MTP2014.S727.g14481.01.p
MRRTEDRLEPGRKCKTSCVRDSDCRAPNKNCYCDDYCGMSCFNKDAECGEPEQLANGSVR
RSHIRYRGVAIYKCNNGYYMENGSNGRTCRSDKKWSGTLPVCKRGCSVPENQGNAFAKTP
GNGFPIGQVIQFACRPGYWMEGSPDSTCLNGLTWSIPTFLCSKQKCSSLQVLNGEVEYTK
ELEVGTRATVQCARVMKCRPPPVLDNGSIEDYGREYVYGLKIFYRCNTGFKIIGPSSGTC
DENDSWGENPVCEVDADCDFEYSRTSPSLCGYTNPNGGWVRVFEMHTRTNQFGYIAKSDR
NGAKLGSPVIPSSWTESEKICISFHYKLSSSGKLAVISGTIKWETHSREVKNTWLNAAIN
YDMRPNFQVYFETMFSIVELDDVKVKKVQCDDNCRLVCLNGGLCVNRINSYTCFCINGFE
GRRCETDTKCEQAPPSITNGRLIGRSVIPLLGTSISYECNDYKYKFVGERYETRKLTVTC
RRSSWGRSFWSTEPRRLSCEVVECRDEVLHPDHSRIINNFFQKVIWYIFNSISIECNSGY
EFDGGAKQLETVCQSSGRWNPAVIDCQRVQCPRLRISNSRIRGGNSYEDITTISCNTGFE
LVGEFQLRCQADKTWSHPYPHCQGITCKRPNPLEHAVNERYSIGKTFFEYKGKYKYPGCR
SGYKLTGTRIRSCQADRNWSGEAPYCKEIICPDPRRDNLIVSPIFTKWKFKVKVYFSCPQ
THELVGKAKAECKVTEEWSNPIPYCREIDTCNSPPLPANANLREVSQPAYSAGSKLYFDC
AEGYALTGEGFFICKANGDWSMSSASCEFQGMNCSKPEKPDRTVFIDADEMEMGYDEMKT
TYPFETILRFKCLDEFIAIGDSITCNSIGQWSNKADCVSPKICHFSSLPDWLSVENNAST
KTRSPNAITVSCTQPKKMVVYNGAWVNSLQIVCQGGNSWEPNITVLRCVQAKNCSKPEKH
DRAAFIEHDERKTTYLSGTILRFQCLDKFIAIGNSITCNNNGQWSNKADCVSPRLCYLSS
LPDWLSVENSYSTRTRVHDAITVTCKQPERVVIDNDNRNKSVQIVCQGGNLWKPNIAALR
CGLSSSQCSKRTEDRLEPGRICRKPCVRDSDCRAPNKNCYCDDYCGMSCFNKDAECGEPE
QLANGSVRRSHIRYRGVAIYECNNGYYMENGSNGRTCRSDKKWSGTLPVCKRGCSVPENQ
GNAFAKTPGNGFPIGQVIQFACRPGYWMEGSPDSTCLNGLTWSIPTFLCSKQKCSSLQVL
NGEIEYTKELEVGTRATVQCARGNY
Nucleotide sequence
Length: 4,249
>Harore.CG.MTP2014.S727.g14481.01.t
AATGAATAGTGCGCACAGGAAATCATTGGTGGATTGTTAAGGAAACAGTATTCAAGTTTT
TTGATGAGTCCCCAAACAGATGAGGAGAACGGAGGACCGACTCGAGCCAGGTCGGAAATG
CAAAACATCTTGCGTGCGAGACAGTGATTGCAGGGCTCCGAACAAGAATTGTTATTGCGA
TGACTACTGCGGAATGTCTTGCTTTAATAAAGATGCTGAATGCGGCGAACCAGAACAACT
AGCAAATGGTTCAGTGCGCCGTTCACATATACGTTATAGGGGAGTGGCCATTTACAAATG
CAACAATGGTTATTACATGGAAAATGGATCTAACGGAAGAACATGTCGTTCAGACAAGAA
ATGGAGTGGAACTCTACCAGTTTGTAAAAGGGGCTGCTCCGTACCAGAAAATCAAGGAAA
TGCTTTTGCTAAGACTCCTGGAAATGGATTTCCTATTGGTCAAGTTATTCAATTCGCATG
CAGACCAGGTTACTGGATGGAAGGATCCCCAGACTCTACATGCTTAAACGGCCTCACTTG
GTCAATTCCAACATTTCTTTGTAGCAAGCAAAAATGTTCGAGTTTGCAAGTATTAAACGG
AGAGGTTGAGTACACGAAGGAACTCGAAGTTGGGACGAGAGCAACTGTTCAATGCGCTCG
TGTTATGAAGTGTCGACCTCCTCCTGTCTTAGACAACGGATCGATCGAAGACTATGGACG
AGAATATGTATATGGGCTGAAAATATTTTATAGATGTAACACTGGATTTAAAATTATAGG
ACCAAGCTCAGGAACTTGTGATGAAAATGATTCTTGGGGAGAAAATCCTGTCTGTGAAGT
CGATGCCGATTGTGATTTCGAATATTCAAGGACCTCTCCCTCTCTCTGTGGTTATACAAA
CCCAAATGGTGGCTGGGTTCGGGTTTTTGAAATGCATACAAGAACAAACCAGTTCGGTTA
TATCGCGAAATCTGATAGAAATGGCGCGAAACTCGGGTCTCCAGTCATTCCATCTTCATG
GACAGAGAGTGAAAAGATTTGTATATCGTTTCATTATAAATTATCAAGTTCGGGAAAACT
AGCAGTAATATCTGGCACAATAAAATGGGAAACTCATTCACGAGAAGTAAAAAATACATG
GTTGAATGCTGCAATTAACTATGATATGCGACCAAATTTTCAAGTTTATTTTGAAACGAT
GTTTAGCATTGTCGAGTTGGATGATGTCAAAGTTAAGAAAGTGCAATGCGATGACAATTG
CAGATTAGTGTGCCTTAATGGTGGACTTTGTGTAAATAGAATCAACAGCTACACTTGCTT
CTGTATAAATGGATTTGAAGGAAGAAGATGTGAGACCGATACTAAATGTGAACAAGCTCC
TCCCAGTATTACAAATGGTCGGTTGATTGGAAGATCCGTGATTCCTTTGCTGGGGACTAG
CATCAGTTACGAATGCAATGATTACAAATACAAATTTGTAGGAGAACGGTATGAAACTCG
AAAACTCACGGTAACTTGCAGACGATCGTCTTGGGGTCGGAGTTTTTGGTCAACAGAGCC
TAGGAGACTCAGTTGTGAAGTGGTAGAATGCAGAGATGAAGTGTTGCACCCTGACCATTC
CCGCATAATAAACAACTTTTTCCAAAAAGTTATTTGGTATATATTCAATTCAATCTCCAT
TGAATGCAACAGTGGGTACGAATTTGATGGAGGAGCAAAGCAGCTCGAGACAGTATGTCA
AAGCTCTGGAAGATGGAACCCTGCTGTTATAGATTGTCAAAGAGTTCAATGTCCTCGCTT
GCGAATCAGCAATAGCAGGATTAGAGGAGGTAATTCATACGAAGATATAACAACTATTTC
CTGCAATACTGGATTCGAACTCGTAGGGGAATTTCAGTTGCGTTGTCAAGCCGATAAAAC
TTGGAGCCATCCATATCCTCATTGTCAAGGAATTACTTGCAAACGACCTAATCCTCTTGA
ACATGCTGTCAACGAAAGATATTCCATTGGAAAAACATTTTTTGAGTACAAAGGAAAGTA
TAAGTATCCTGGATGTCGGAGTGGTTATAAACTGACAGGAACAAGGATCAGATCGTGCCA
GGCAGATAGAAACTGGTCCGGCGAGGCACCTTACTGTAAAGAAATCATATGTCCTGATCC
AAGGAGGGATAATTTGATAGTCTCACCTATCTTTACCAAATGGAAATTCAAAGTGAAAGT
ATATTTTTCTTGCCCACAAACTCATGAGTTGGTTGGAAAGGCTAAAGCAGAATGCAAGGT
CACAGAGGAATGGTCAAATCCAATTCCCTATTGTAGAGAGATTGATACTTGCAACTCACC
ACCACTTCCTGCAAATGCTAATTTGAGGGAAGTTTCACAGCCAGCATACAGTGCAGGATC
AAAATTATACTTTGACTGTGCTGAAGGTTATGCGCTTACTGGTGAAGGATTTTTCATTTG
TAAAGCTAATGGTGATTGGTCGATGTCTAGCGCGTCATGTGAATTTCAAGGCATGAACTG
CAGCAAACCAGAAAAGCCTGATCGAACAGTATTCATTGATGCTGATGAGATGGAGATGGG
GTATGATGAAATGAAGACGACATATCCCTTTGAAACTATTCTTCGATTTAAATGCCTGGA
TGAATTCATCGCAATCGGCGATAGCATCACATGCAATAGTATAGGACAATGGTCGAATAA
AGCCGACTGTGTGTCTCCAAAAATATGCCACTTTAGTTCTCTTCCTGATTGGCTCTCTGT
GGAGAATAACGCTTCAACAAAAACTCGGTCTCCTAATGCCATCACAGTATCATGTACACA
GCCAAAAAAAATGGTCGTTTATAATGGTGCATGGGTCAATTCACTGCAGATTGTTTGCCA
AGGAGGAAACAGTTGGGAGCCAAATATTACAGTGTTACGTTGTGTTCAAGCAAAGAATTG
CAGCAAACCAGAAAAGCATGATAGAGCAGCATTTATTGAGCATGATGAAAGGAAGACGAC
ATATCTCTCTGGAACTATTCTTCGATTTCAATGCCTGGATAAATTCATCGCAATCGGCAA
TAGCATCACATGCAATAATAATGGACAATGGTCGAATAAAGCTGACTGTGTGTCTCCAAG
ATTATGCTACTTAAGTTCTCTTCCTGATTGGCTCTCTGTGGAGAATTCATATTCAACAAG
AACTCGGGTTCATGATGCCATCACAGTGACATGTAAACAGCCAGAACGAGTGGTCATAGA
TAATGATAATAGAAACAAATCAGTGCAGATTGTTTGTCAAGGAGGAAACTTGTGGAAGCC
GAATATTGCAGCGTTACGTTGTGGTTTGAGCAGTTCGCAATGTTCTAAGAGAACGGAGGA
CCGACTCGAGCCAGGTCGGATATGCAGAAAACCTTGCGTGCGAGACAGTGATTGCAGGGC
TCCGAACAAGAATTGTTATTGCGATGACTACTGCGGAATGTCTTGCTTTAATAAAGATGC
TGAATGCGGCGAACCAGAACAACTAGCAAATGGTTCAGTGCGCCGTTCACATATACGTTA
TAGGGGAGTGGCCATTTACGAATGCAACAATGGTTATTACATGGAAAATGGATCTAACGG
AAGAACATGTCGTTCAGACAAGAAATGGAGTGGAACTCTACCAGTTTGTAAAAGGGGCTG
CTCCGTACCAGAAAATCAAGGAAATGCTTTTGCTAAGACTCCTGGAAATGGATTTCCTAT
TGGTCAAGTTATTCAATTCGCATGCAGACCAGGTTACTGGATGGAAGGATCCCCAGACTC
TACATGCTTAAACGGCCTCACTTGGTCAATTCCAACATTTCTTTGTAGCAAGCAAAAATG
TTCGAGTTTGCAAGTATTAAACGGAGAGATTGAGTACACGAAGGAACTCGAAGTTGGGAC
GAGAGCAACTGTTCAATGCGCTCGTGGTAACTATTAGAAGGTTCTTGTGAAAACCGTTGT
TTAACTACCGGACTTCCATGTGGATGTGCTTCAAACTGCACCACATCTGAGATCGGATGT
TGCGATGATTATGAAATGCTGTGTGATAAATAATCATGTCATGTTGTGTTATGTAAACAA
CAGGACATGATTACTTTATCATGTAAAAAAAGTAAACTAGTTGTAAAACATGTTTAGATA
TTGTCTCAATGTCACTGGCGAGTGCTATATATTTAGTGGTGATAAAATACGGACACAAGG
GCCACAGAACGCAGTTAGGCAACCATCTTCGCTAATGGAACCCTGGAAA
| ProSiteProfiles |
Sushi_SCR_CCP_dom (IPR000436) - T[46-104] 10.561 - T[105-163] 8.448 - T[196-254] 10.706 - T[428-501] 6.925 - T[502-568] 7.588 - T[569-624] 9.535 - T[625-688] 9.38 - T[689-747] 9.369 - T[749-809] 11.783 - T[812-879] 7.495 - T[881-950] 5.786 - T[952-1012] 8.531 - T[1134-1192] 10.592 - T[1193-1251] 8.448 |
| SMART |
Sushi_SCR_CCP_dom (IPR000436) - T[48-102] 1.3E-11 - T[106-161] 7.7E-9 - T[198-252] 1.8E-10 - T[430-499] 0.49 - T[504-566] 0.34 - T[571-622] 6.4E-10 - T[627-686] 4.0E-7 - T[691-745] 6.2E-6 - T[751-807] 4.1E-10 - T[814-877] 2.7 - T[954-1010] 8.0E-5 - T[1016-1081] 17.0 - T[1136-1190] 1.2E-11 - T[1194-1249] 7.7E-9 |
| SUPERFAMILY |
Sushi/SCR/CCP_sf (IPR035976) - T[48-110] 4.03E-14 - T[106-171] 2.92E-10 - T[198-255] 3.34E-11 - T[523-572] 7.64E-7 - T[582-635] 7.64E-12 - T[625-695] 1.62E-9 - T[686-748] 2.36E-9 - T[751-818] 1.12E-10 - T[839-878] 5.28E-5 - T[951-1007] 2.64E-7 - T[1136-1198] 3.61E-14 - T[1194-1259] 2.78E-10 |
| CDD |
Sushi_SCR_CCP_dom (IPR000436) - T[48-103] 3.3317E-8 - T[106-161] 8.21049E-8 - T[198-253] 1.03193E-10 - T[571-623] 4.68182E-6 - T[627-687] 5.61514E-7 - T[691-746] 1.40732E-5 - T[751-808] 2.25114E-8 - T[971-1007] 0.00145216 - T[1136-1191] 2.76559E-8 - T[1194-1249] 8.21049E-8 |
| Pfam |
Sushi_SCR_CCP_dom (IPR000436) - T[48-102] 2.5E-9 - T[106-161] 1.6E-8 - T[198-252] 4.1E-8 - T[531-566] 0.0016 - T[574-622] 1.8E-6 - T[627-686] 2.5E-6 - T[751-804] 2.0E-6 - T[954-1008] 0.0014 - T[1136-1190] 2.4E-9 - T[1194-1249] 1.6E-8 |
| SMART |
MAM_dom (IPR000998) - T[253-392] 1.7E-5 |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[255-390] 4.91E-8 |
| ProSiteProfiles |
MAM_dom (IPR000998) - T[256-392] 10.131 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[391-425] 16.625 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[391-425] 2.1E-6 |
| SMART |
EGF-like_dom (IPR000742) - T[393-425] 5.3E-6 |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[404-415] . |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[413-424] . - T[413-424] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SVEP1_HUMAN | 23.301 % | 193 | 1.56E-49 |
| CSMD3_HUMAN | 23.798 % | 194 | 1.29E-49 |
| CR1_HUMAN | 22.559 % | 167 | 1.29E-41 |