- Transcript 'Moocci.CG.ELv1_2.S54...' >
- Transcript 'Moocul.CG.ELv1_2.S11...' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Boleac.CG.SB_v3.S453...' >
- Transcript 'Harore.CG.MTP2014.S7...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S706.g00239.01.t
Possible name(s)
COMP; THBS3; THBS4
Gene model
Location
S706 [3,178 / 13,608]
Amino acid sequence
Length: 769
>Harore.CG.MTP2014.S706.g00239.01.p
MVRRNLGNYCSQSDPQANEDPAILNMINTFEPVSELIVQISDLTSALRDIHAGIKEQTLE
TKELRLALQGCSACTGTGPSRPIYVQQSDYQQQPTTKKSQRPLRKCNSDPCFRGVNCTDS
PTGFTCGKCPTGLTGNGSYCVDINECTQLTDSCSPVAGCVNTPGGYYCNPCPNGYIQTFQ
EMTVGNDVIQKQICNDIDECKINNGGCTDFSKCVNTAGSYKCGVCLQGYQGNQTSGCVKM
RQCSNGALNPCDPRAECVVTDTAAEYACECHDGYSGNGYVCGLDSDLDGYPDDPLPCNTK
KCSQDNCPNVPNSGQEDTDIDEIGDACDPDADNDGILNEEDNCILKANKDQQNSDSDYFG
DACDNCPNANNPLQTDHDGNGEGDECDNDVDGDGIPETLENCPYVPNYSQVDLDDDRVGD
ACDNCPNLSNPMQLDTDNDLVGDMCDTDIDTDGDGHQDNKDNCPNDINCSQLDTDNDGIG
DACDDDDDNDGIPDYGVFRNDNCRLINNPNQIDADKDNVGDACENDQDGDGVYDWDDICP
YNREISVTDFRSYQKVMLDPNDRAEIQPNWIVMNEGMEILQTTNSDPGLFIGYDSFNGVD
FSGTFFVDTANDDDFAGILFSYQSSKKFYVVMWKQTTQEYWKKNPFAATAHSGLQLKAVD
SVTGPGPELRNALWQSGDTDGQARMIWFDPVSTGWKDRTAYRWQLKHRPEIGYIRILFLE
GHRLLADTGPIIDRTITGGRLGVFCFSQEKVIWSNLKYKCNDDIPDDYY
Nucleotide sequence
Length: 2,536
>Harore.CG.MTP2014.S706.g00239.01.t
ATGGTTCGACGCAATCTTGGTAACTATTGTTCACAATCTGACCCGCAAGCTAACGAGGAT
CCGGCGATTCTCAATATGATCAATACCTTTGAACCCGTGTCCGAATTAATAGTACAGATT
TCAGATCTCACATCAGCATTGCGAGATATACATGCTGGAATCAAAGAACAAACATTGGAG
ACAAAAGAATTAAGATTGGCATTACAAGGATGTTCAGCGTGTACTGGAACAGGTCCATCC
AGACCTATCTACGTTCAACAAAGTGACTATCAGCAACAACCGACAACGAAGAAGTCACAG
AGACCGCTTCGAAAATGCAATTCCGATCCATGTTTCAGAGGAGTTAATTGTACAGATTCA
CCTACGGGATTCACATGTGGAAAATGTCCGACTGGTCTCACAGGTAACGGAAGTTATTGT
GTCGACATAAACGAATGCACTCAACTAACCGATTCATGTTCGCCTGTTGCTGGATGTGTT
AACACACCTGGTGGATATTACTGCAATCCGTGCCCGAATGGATACATTCAAACTTTTCAA
GAAATGACGGTGGGAAATGATGTCATTCAAAAACAAATTTGCAATGACATAGACGAATGC
AAAATTAACAATGGGGGTTGCACTGACTTCTCAAAATGTGTCAACACAGCGGGGTCTTAC
AAATGTGGCGTATGCTTACAAGGTTACCAAGGCAACCAGACGTCCGGCTGTGTTAAAATG
CGTCAATGCAGCAATGGAGCCCTTAACCCATGTGATCCACGCGCAGAGTGCGTTGTAACT
GACACTGCGGCGGAATATGCGTGTGAATGTCATGACGGTTATTCAGGAAATGGATATGTG
TGTGGATTGGATTCGGATTTGGACGGATATCCGGATGACCCACTGCCTTGCAACACAAAG
AAGTGTTCACAAGACAATTGCCCGAATGTTCCAAACAGCGGACAGGAGGACACAGACATA
GATGAAATTGGAGATGCATGTGATCCGGATGCTGATAACGACGGAATCCTTAATGAGGAA
GATAACTGCATTCTGAAGGCAAATAAGGATCAACAGAATTCTGATAGCGATTACTTTGGC
GATGCATGTGACAATTGTCCAAACGCTAACAATCCATTGCAAACAGATCATGATGGAAAT
GGAGAAGGAGATGAATGTGATAATGATGTTGATGGTGATGGTATTCCTGAGACTCTTGAA
AATTGTCCCTACGTTCCGAATTATTCCCAAGTCGATTTAGATGACGACAGAGTTGGGGAT
GCTTGTGACAACTGCCCAAATTTAAGCAACCCAATGCAGCTTGACACTGATAACGATCTG
GTTGGTGATATGTGCGATACTGACATAGATACGGACGGTGATGGTCACCAAGACAACAAG
GACAATTGCCCGAATGATATTAATTGTTCTCAATTGGATACAGATAACGATGGTATTGGT
GATGCGTGTGATGATGACGATGATAATGATGGCATTCCTGACTACGGTGTGTTTCGAAAC
GACAACTGCAGATTAATAAATAATCCAAACCAGATTGATGCAGACAAAGATAATGTTGGA
GACGCATGTGAAAATGACCAAGACGGCGATGGTGTTTATGATTGGGATGATATTTGCCCT
TACAATCGTGAAATAAGCGTGACCGACTTTCGATCATATCAAAAGGTCATGTTAGACCCG
AACGACAGAGCGGAAATCCAACCAAACTGGATCGTCATGAATGAAGGAATGGAAATATTA
CAGACAACAAATAGTGATCCTGGATTGTTCATTGGATATGATTCATTCAACGGCGTCGAT
TTCAGCGGAACTTTTTTCGTGGACACGGCGAACGACGATGATTTTGCCGGGATATTATTC
AGTTATCAAAGCAGTAAAAAATTCTACGTTGTCATGTGGAAACAAACAACACAAGAATAT
TGGAAAAAAAATCCGTTCGCTGCAACAGCGCATTCCGGTTTACAACTGAAAGCAGTCGAT
TCAGTTACTGGTCCGGGACCTGAATTACGCAACGCATTGTGGCAGTCTGGAGATACCGAT
GGTCAAGCACGTATGATCTGGTTCGATCCGGTTAGTACCGGTTGGAAAGACAGGACGGCA
TATAGATGGCAACTTAAACATCGACCGGAGATTGGATACATAAGGATTCTATTTCTTGAA
GGACATAGACTGTTAGCAGACACAGGACCAATAATTGATAGAACTATCACTGGAGGTCGC
CTAGGTGTATTTTGTTTCAGTCAAGAAAAAGTTATCTGGTCGAATTTGAAATATAAATGC
AATGATGACATTCCTGATGATTATTACTGACAAAGCGTCACAATCTCTTGAAAGATACTA
CTGTTATATCACAGACTAATTGACCTGTCAATAAACAGGTCATAAGACAATATACTCCTA
TTTATTCACCGAATTTCTCTCGAGTTTTTTAAAGTAAAAAATAGATCACACAGGACCGGT
TGGGTCACCCATTTTTTTTCAATTTTCTCATTCTAATTCAATTTTCGCGGAGAAACTCGA
CGTTGCCCAGGTAAGC
| PANTHER |
Thrombospondin (IPR037349) - T[29-768] 0.0 |
| Pfam |
Thbs/COMP_coiled-coil (IPR024665) - T[34-74] 1.7E-7 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[102-141] 6.576 - T[196-235] 6.996 - T[239-282] 11.507 |
| SMART |
EGF-like_dom (IPR000742) - T[105-141] 0.49 - T[145-195] 16.0 - T[199-238] 0.5 - T[242-282] 0.19 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[106-141] 0.28 - T[142-181] 3.3E-7 - T[196-238] 5.3E-7 |
| Pfam |
EGF-like_Ca-bd_dom (IPR001881) - T[142-176] 7.2E-9 - T[196-235] 1.5E-7 |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[196-222] . |
| Gene3D |
TSP_type-3_rpt (IPR028974) - T[261-362] 1.7E-20 - T[363-423] 6.2E-19 - T[424-548] 9.9E-39 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[268-281] . |
| SUPERFAMILY |
TSP_type-3_rpt (IPR028974) - T[275-364] 3.4E-10 - T[350-423] 1.96E-15 - T[421-546] 4.32E-30 |
| ProSiteProfiles |
Thrombospondin_3_rpt (IPR017897) - T[283-315] 11.131 - T[316-351] 16.312 - T[352-374] 10.62 - T[375-410] 15.935 - T[411-433] 11.04 - T[434-471] 12.791 - T[472-511] 13.831 - T[512-547] 13.673 |
| Pfam |
Thrombospondin_3-like_rpt (IPR003367) - T[316-351] 5.5E-10 - T[375-410] 6.4E-12 - T[412-433] 0.014 - T[435-469] 3.8E-7 - T[473-511] 1.3E-7 - T[513-544] 1.6E-9 |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[548-763] 1.38E-94 |
| ProSiteProfiles |
Thrombospondin_C (IPR008859) - T[551-765] 96.463 |
| Pfam |
Thrombospondin_C (IPR008859) - T[566-762] 1.9E-90 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TSP4_HUMAN | 54.008 % | 741 | 0 |
| TSP3_HUMAN | 55.556 % | 762 | 0 |
| COMP_HUMAN | 50.882 % | 692 | 0 |