- Transcript 'Harore.CG.MTP2014.S6...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S6.g03181.01.t
Possible name(s)
LRP1B; LRP2; SORL1
Gene model
Location
S6 [296,616 / 299,666]
Amino acid sequence
Length: 480
>Harore.CG.MTP2014.S6.g03181.01.p
MELGKNIHLFVLFCLYFNFGQVGALSSCEDGQFTCLNSQCLNGTLVCNHRDSCGDGSDEI
FCKNKTDTCWSWQTNCTGGKCEDGTFQCNNGKCIPLNVACDRIDNCGDGSDEIRNKKGFK
CPFGGGGDVCVLPQRHVNDNFLHCSTNRDLCSEGENKCFTCFDQMFKISLTQQCDGIFDC
SDLSDECPCEDNTHDVCLNICGLQGTKANCTKGTYSCDNQLTELRKMTICDGIADCADQS
DEMSCGHKKRSHKKPVVITCPGNADGTEIIRAIMCDGLPECYDLADECNNTCKRPTLPPY
CQLSRRLRRNFERYNLWQYECTSVSGNRRNHTVAELCNGIWSDCYPRLELEETNCSVRFY
CQSHKLISLDRALVCDGYNQCDDGSDEASCDNRYNCDKGKPLSVPNRFVSDGIEDCKDGS
DECPRSLDDKAVASRLEMISQPFFRVWIWVMAFVSLLGNSYVIVKTLRNSTTRFKTEKKR
Nucleotide sequence
Length: 1,443
>Harore.CG.MTP2014.S6.g03181.01.t
ATGGAATTGGGCAAGAATATTCATCTTTTTGTGCTATTTTGTCTCTACTTCAATTTTGGC
CAGGTGGGTGCCCTAAGTTCGTGTGAGGACGGACAATTCACGTGCTTGAATTCTCAGTGC
TTGAACGGGACTCTAGTGTGCAACCACAGAGATTCATGTGGAGACGGCAGCGATGAAATC
TTCTGCAAAAACAAGACAGACACTTGCTGGTCCTGGCAAACGAATTGCACAGGTGGAAAG
TGCGAAGACGGTACCTTCCAGTGCAACAACGGAAAATGTATTCCTTTAAATGTTGCTTGT
GACCGGATAGACAATTGTGGGGACGGAAGTGATGAGATTCGCAATAAGAAAGGATTCAAG
TGTCCCTTTGGCGGTGGAGGGGATGTTTGCGTCCTTCCACAAAGACATGTAAACGACAAT
TTTTTGCACTGTAGCACCAATCGGGATTTGTGCTCTGAGGGAGAAAACAAGTGCTTCACT
TGCTTTGATCAAATGTTCAAGATATCTTTAACCCAGCAATGTGATGGTATCTTCGACTGT
TCGGATCTATCGGATGAATGTCCTTGTGAGGACAATACTCACGATGTATGCTTGAACATT
TGCGGATTACAAGGGACGAAAGCCAACTGTACTAAAGGAACATACAGTTGTGACAATCAG
CTGACTGAACTAAGGAAGATGACAATTTGTGATGGAATCGCGGATTGCGCAGATCAATCA
GACGAAATGTCGTGCGGACACAAGAAACGATCCCACAAAAAGCCTGTCGTCATCACTTGC
CCAGGAAATGCTGATGGAACCGAAATTATACGCGCAATAATGTGTGATGGACTCCCGGAA
TGCTACGACCTTGCGGACGAATGCAATAACACCTGTAAGCGCCCCACCTTACCCCCCTAT
TGTCAACTTTCTAGGAGACTTCGTAGAAATTTCGAACGGTATAACTTGTGGCAGTACGAA
TGCACGAGTGTATCTGGAAATCGTAGAAATCACACAGTTGCCGAACTTTGTAACGGAATC
TGGTCCGATTGTTATCCTCGTCTTGAACTGGAGGAGACCAACTGCTCCGTGAGATTTTAC
TGTCAAAGTCATAAGCTGATAAGCCTCGACAGGGCGCTGGTATGTGACGGTTACAACCAA
TGTGACGACGGATCCGACGAAGCTTCTTGCGACAATCGGTACAACTGTGATAAAGGCAAA
CCGCTTTCGGTCCCGAACCGCTTCGTATCGGATGGCATAGAAGATTGCAAAGATGGTAGT
GACGAATGTCCTCGGTCTTTAGATGACAAAGCTGTTGCATCCAGACTGGAAATGATCAGC
CAACCGTTTTTCCGAGTTTGGATATGGGTGATGGCGTTTGTTTCTCTGCTGGGTAATAGC
TACGTGATCGTTAAAACTCTCAGAAATTCTACTACACGTTTTAAAACCGAGAAAAAGAGA
TAA
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[26-62] 2.09E-8 - T[74-114] 2.09E-10 - T[209-248] 4.45E-7 - T[355-390] 9.42E-6 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[27-64] 4.6E-7 - T[80-117] 2.0E-8 - T[150-191] 0.038 - T[209-247] 2.6E-4 - T[259-290] 0.43 - T[354-392] 1.4E-4 - T[395-425] 1.7 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[27-62] 3.1E-6 - T[80-112] 2.8E-9 - T[354-390] 1.7E-5 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[27-63] 11.512 - T[80-122] 12.225 - T[143-190] 8.788 - T[209-246] 9.613 - T[354-391] 10.15 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[28-62] 3.39489E-6 - T[81-112] 9.1952E-8 - T[359-390] 0.00611674 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[38-59] 4.2E-26 - T[91-112] 4.2E-26 - T[165-186] 4.2E-26 - T[221-242] 4.2E-26 - T[266-287] 4.2E-26 - T[401-422] 4.2E-26 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRP1B_HUMAN | 29.581 % | 86.7 | 8.66E-18 |
| LRP2_HUMAN | 31.716 % | 87.4 | 5.73E-18 |
| SORL_HUMAN | 28.702 % | 92.8 | 8.35E-20 |