- Transcript 'KH2012:KH.C1.159.v1....' >
- Transcript 'KH2012:KH.C1.159.v1....' >
- Transcript 'KH2012:KH.C1.159.v1....' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Harore.CG.MTP2014.S6...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S6.g02414.02.t
Possible name(s)
BTRC; FBXW11; TRAF7
Gene model
Location
S6 [475,004 / 481,270]
Amino acid sequence
Length: 867
>Harore.CG.MTP2014.S6.g02414.02.p
MKQHSFLASNGGGDKASIGSSHQHAVSRGSSSANSVISNKSVLSKPVNSPEHFISSPKMA
SNRPRIPSMPYTDQRYRPGAMTPQNPHPTDMLTDGRLLRSSPSVVRRHSKSSITRVDGGF
ILGSGRPPMNTRKTPDQIKPKIETTFGPAYSAVTTITTDEGEREVQYHHDRTPSVSSYRS
QNDNDDVQNGSKHGSLSRSHHKELFSRSSRTGSALSSSSTLSQTSYRSPVSDDEIPLMFA
EPPPIQLLCKICNRVYKDPTIMSCGHSYCKACSMSMELCPVDGKSMTAMIENIVVREQVG
SLFVHCRFGVRLSDLLGEYEIDSNGCPFTIKLAERRKHESECEYAAVTCPNNPACPPMLK
RHLQEHLETCKHMKCPNHKFGCLFVGDQDSCADHVKTCKFEMAKDFLQLTQDRINELTLD
MRQRDEENSFLRSMLSKTADRLDEMEKAYEVKIEVLTLNQNKLTDELRQMRQDTAIISNE
LQDLNTKLNMGAIGMYDPQQIFKCKGTFVGHSGPVWCLYVHGDLLFSGSSDKNIKVWDTA
TNYKCQKTLEGHGGIVLALTTKGSYLYSGSADCSIKVWDISKLEEVNSVVAHENAVCTLV
CSYNMLFSGSLKNIKVWTIEDSKLTLRQELKGLNHWVRALVASQNYIYSGCYQTIQIWDV
RTLECVRVLETSGGSVYSIAVTNHHVLCGTYENVIHVWDVGNYDQVATLTGHVGTIYSLS
VLSTPDQTKVFSASYDRSLRVWSMDNMICTQTLIRHQGSVTSLAVSRGRVFSGAVDSTVK
VWQYSDFGPAWCSTCSGSTLDILDILCWVKGPFYSFLNMKTSRKNLINVHKVFSYSHIDL
FFIRLFHYNNSLAIMNFLIASKLSVIY
Nucleotide sequence
Length: 3,303
>Harore.CG.MTP2014.S6.g02414.02.t
CATAACTCAGGTATATGTTATGTATGAATAATTATTAACCTGAACTGTATTATTATCTTA
GTCTAGCAATGGGAATTTTGTATAATTTAGTTAATGAAGACAATGGGCTACTACTGAATT
CATGTGTTGATTGATTAGCAAATATATCATTGATGAAACAGCACAGTTTTTTAGCAAGCA
ATGGTGGTGGAGATAAAGCTTCTATTGGATCATCACATCAACACGCCGTGTCTCGAGGTA
GTTCCAGTGCGAATTCTGTGATCTCAAACAAATCTGTTTTGTCTAAACCCGTCAACTCTC
CAGAACATTTCATATCGTCACCCAAAATGGCATCGAACCGACCCCGCATACCGTCAATGC
CGTACACGGACCAGAGGTACCGCCCTGGGGCAATGACCCCACAGAATCCTCATCCCACAG
ATATGTTGACAGATGGACGACTGCTAAGATCAAGTCCGTCTGTTGTCCGGCGTCATTCTA
AATCTTCCATCACAAGAGTGGATGGAGGATTCATATTGGGGTCAGGAAGACCTCCAATGA
ACACTAGAAAAACTCCAGATCAAATCAAGCCCAAGATTGAAACTACTTTTGGTCCAGCCT
ACTCTGCAGTCACCACTATTACAACAGATGAAGGAGAGAGAGAAGTTCAATATCATCATG
ACAGGACACCTTCAGTTTCAAGTTACAGATCTCAGAATGACAATGACGATGTTCAAAATG
GAAGCAAACATGGCAGTTTGTCTCGAAGTCACCATAAGGAGTTGTTTTCACGATCGTCCC
GGACCGGCTCTGCATTATCCTCGTCATCCACACTCTCCCAAACTTCTTATAGATCCCCCG
TTTCCGATGATGAGATCCCACTGATGTTTGCCGAGCCCCCTCCAATTCAACTGTTGTGCA
AGATTTGTAACAGAGTTTACAAAGATCCAACAATTATGTCATGTGGTCACTCGTATTGCA
AAGCATGCAGTATGTCTATGGAATTGTGTCCTGTTGATGGGAAAAGTATGACAGCTATGA
TCGAAAACATTGTGGTCCGAGAGCAAGTTGGTTCCTTATTCGTTCACTGTAGGTTCGGCG
TAAGATTGTCTGATTTATTGGGAGAATATGAGATTGATTCTAACGGGTGTCCTTTCACTA
TCAAGCTAGCAGAGAGAAGAAAGCACGAATCAGAATGCGAGTATGCTGCAGTTACCTGCC
CCAACAATCCAGCTTGCCCACCTATGTTAAAAAGACACTTGCAAGAACATTTAGAAACCT
GCAAGCACATGAAATGTCCCAATCATAAATTCGGATGCCTTTTCGTTGGCGACCAAGACA
GTTGTGCCGATCATGTCAAAACTTGCAAGTTTGAGATGGCAAAGGACTTTCTTCAGCTGA
CGCAGGATAGAATCAATGAATTAACTTTAGATATGAGACAAAGAGATGAAGAAAATAGTT
TCCTCAGATCTATGTTGTCAAAAACTGCAGACAGATTGGATGAAATGGAAAAAGCATATG
AAGTAAAAATTGAGGTTTTGACACTAAACCAGAACAAACTCACGGACGAGCTACGTCAAA
TGAGACAAGATACTGCCATTATATCAAATGAACTACAGGATCTCAATACAAAGTTAAATA
TGGGTGCAATAGGAATGTACGATCCACAACAAATTTTCAAATGCAAAGGAACGTTCGTCG
GACACAGTGGTCCGGTCTGGTGTCTATACGTGCACGGAGATCTCCTGTTCAGTGGTTCTT
CGGATAAAAATATCAAAGTTTGGGACACTGCAACAAATTACAAATGTCAAAAAACACTGG
AAGGTCACGGCGGAATTGTTCTAGCACTGACTACGAAAGGAAGCTATTTGTACAGTGGTT
CGGCTGATTGTTCAATAAAGGTATGGGACATCAGTAAATTAGAGGAAGTCAATTCCGTAG
TGGCTCATGAAAATGCAGTGTGCACTTTGGTTTGCTCTTACAACATGCTATTCAGTGGAT
CTTTGAAAAACATCAAGGTGTGGACGATCGAAGATTCCAAATTAACTCTCAGACAAGAAT
TGAAAGGTTTAAACCACTGGGTTCGAGCTCTGGTTGCTTCACAAAATTATATTTACAGTG
GCTGCTATCAGACCATACAGATATGGGATGTACGTACACTAGAATGTGTCCGAGTTCTGG
AGACATCAGGAGGAAGTGTGTACTCTATTGCTGTAACTAACCATCATGTCTTGTGTGGTA
CATATGAGAATGTTATACACGTTTGGGATGTTGGAAATTATGACCAAGTTGCCACCTTGA
CCGGACATGTCGGCACAATCTACTCTCTTTCTGTATTGAGCACGCCTGACCAAACCAAGG
TGTTCAGTGCTTCGTATGATCGCTCTCTGAGGGTTTGGAGCATGGACAATATGATTTGTA
CACAAACACTAATCAGACATCAGGGTAGTGTTACTTCACTTGCTGTCTCGAGGGGCCGAG
TATTTTCTGGCGCTGTTGATTCGACTGTTAAAGTGTGGCAATATTCTGATTTTGGTCCAG
CTTGGTGTTCTACCTGTAGTGGGTCAACGCTAGACATACTAGATATACTATGTTGGGTCA
AGGGACCTTTCTACTCTTTCCTGAATATGAAAACCTCACGTAAAAACTTAATAAATGTTC
ACAAGGTTTTTTCCTATTCACACATTGACCTTTTTTTCATTCGTCTTTTTCATTATAACA
ATTCTTTAGCGATTATGAATTTCTTGATAGCCTCTAAATTATCAGTTATATATTAAGTTA
CAACAAGCGGATCAAATAATTCGTAAAATGTTTTAGAATGTTGGGTCAACATTGGCTCAA
TTTATGGAACGCCAATTCGCATGACCCTGTTTTTCTTATCCTGATGACATTTTATGGACA
TCAACAATCGTGTTATAATGGTTTCATGCTGTGTATTGAAGTATTGGTTTTTGAATCTTG
TACAAGATAGAATCAAATACCTTCTGTGCTCTTGTATCCACCTAGTGTTTATAATATGAT
TTAAAATCTACATCTTACCAACCATGTTTTTTTGTTTTCAGGAGAATGATTTTGCAATTT
TTTAAGTTACGTTTGAAATATTTTCTCTTTATATTTCTTTTACAGAATCCGCCTTAGTTA
TTATTGTTAGACTACGCAATATTTGTTCCTAAAACTACAGTTTCCGTTTGTTTAAAAATA
TTAGGTAGTGAAACTTGTGGTCACTCAAGCCTCTAATTTTAAGTTCCTTTAATGTTTTCC
ATAATTTTACAGCAGTGTTGAATCATGATACAACTTTAATAAAATTATCATGTTGATACC
TTG
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[245-293] 4.2E-8 - T[320-367] 1.3E-5 |
| SMART |
Znf_RING (IPR001841) - T[249-282] 7.6E-5 |
| Pfam |
Znf-RING_LisH (IPR027370) - T[249-273] 4.5E-6 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[249-282] 10.763 |
| SUPERFAMILY |
TRAF-like (IPR008974) - T[301-371] 1.18E-9 |
| ProSiteProfiles |
Znf_TRAF (IPR001293) - T[338-408] 9.239 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[489-543] 2.5E-9 - T[544-747] 1.1E-46 - T[748-815] 2.8E-6 |
| SMART |
WD40_repeat (IPR001680) - T[501-538] 2.5E-8 - T[542-579] 5.9E-6 - T[582-618] 2.1 - T[623-659] 3.6 - T[662-699] 0.069 - T[702-743] 2.6E-4 - T[746-783] 1.9E-4 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[503-792] 1.59E-65 |
| Pfam |
WD40_repeat (IPR001680) - T[503-538] 3.7E-6 - T[544-579] 1.1E-5 - T[705-743] 3.2E-4 - T[749-782] 0.016 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[508-792] 42.633 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[508-547] 11.611 - T[549-588] 11.578 - T[709-752] 10.308 - T[753-783] 9.706 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[525-539] 1.9E-6 - T[566-580] 1.9E-6 - T[770-784] 1.9E-6 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[525-539] . - T[566-580] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| FBW1A_HUMAN | 27.329 % | 124 | 1.78E-29 |
| FBW1B_HUMAN | 27.64 % | 130 | 8.46E-32 |
| TRAF7_HUMAN | 58.563 % | 808 | 0 |