- Transcript 'Harore.CG.MTP2014.S6...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S6.g02414.01.t
Possible name(s)
BTRC; FBXW11; TRAF7
Gene model
Location
S6 [475,059 / 480,724]
Amino acid sequence
Length: 695
>Harore.CG.MTP2014.S6.g02414.01.p
MKQHSFLASNGGGDKASIGSSHQHAVSRGSSSANSVISNKSVLSKPVNSPEHFISSPKMA
SNRPRIPSMPYTDQRYRPGAMTPQNPHPTDMLTDGRLLRSSPSVVRRHSKSSITRVDGGF
ILGSGRPPMNTRKTPDQIKVQNGSKHGSLSRSHHKELFSRSSRTGSALSSSSTLSQTSYR
SPVSDDEIPLMFAEPPPIQLLCKICNRVYKDPTIMSCGHSYCKACSMSMELCPVDGKSMT
AMIENIVVREQVGSLFVHCRFGVRLSDLLGEYEIDSNGCPFTIKLAERRKHESECEYAAV
TCPNNPACPPMLKRHLQEHLETCKHMKCPNHKFGCLFVGDQDSCADHVKTCKFEMAKDFL
QLTQDRINELTLDMRQRDEENSFLRSMLSKTADRLDEMEKAYEVKIEVLTLNQNKLTDEL
RQMRQDTAIISNELQDLNTKLNMGAIGMYDPQQIFKCKGTFVGHSGPVWCLYVHGDLLFS
GSSDKNIKVWDISKLEEVNSVVAHENAVCTLVCSYNMLFSGSLKNIKVWTIEDSKLTLRQ
ELKGLNHWVRALVASQNYIYSGCYQTIQIWDVRTLECVRVLETSGGSVYSIAVTNHHVLC
GTYENVIHVWDVGNYDQVATLTGHVGTIYSLSVLSTPDQTKVFSASYDRSLRVWSMDNMI
CTQTLIRHQGSVTSLAVSRGRVFSGAVDSTVKVWQ
Nucleotide sequence
Length: 2,570
>Harore.CG.MTP2014.S6.g02414.01.t
TCTTAGTCTAGCAATGGGAATTTTGTATAATTTAGTTAATGAAGACAATGGGCTACTACT
GAATTCATGTGTTGATTGATTAGCAAATATATCATTGATGAAACAGCACAGTTTTTTAGC
AAGCAATGGTGGTGGAGATAAAGCTTCTATTGGATCATCACATCAACACGCCGTGTCTCG
AGGTAGTTCCAGTGCGAATTCTGTGATCTCAAACAAATCTGTTTTGTCTAAACCCGTCAA
CTCTCCAGAACATTTCATATCGTCACCCAAAATGGCATCGAACCGACCCCGCATACCGTC
AATGCCGTACACGGACCAGAGGTACCGCCCTGGGGCAATGACCCCACAGAATCCTCATCC
CACAGATATGTTGACAGATGGACGACTGCTAAGATCAAGTCCGTCTGTTGTCCGGCGTCA
TTCTAAATCTTCCATCACAAGAGTGGATGGAGGATTCATATTGGGGTCAGGAAGACCTCC
AATGAACACTAGAAAAACTCCAGATCAAATCAAGGTTCAAAATGGAAGCAAACATGGCAG
TTTGTCTCGAAGTCACCATAAGGAGTTGTTTTCACGATCGTCCCGGACCGGCTCTGCATT
ATCCTCGTCATCCACACTCTCCCAAACTTCTTATAGATCCCCCGTTTCCGATGATGAGAT
CCCACTGATGTTTGCCGAGCCCCCTCCAATTCAACTGTTGTGCAAGATTTGTAACAGAGT
TTACAAAGATCCAACAATTATGTCATGTGGTCACTCGTATTGCAAAGCATGCAGTATGTC
TATGGAATTGTGTCCTGTTGATGGGAAAAGTATGACAGCTATGATCGAAAACATTGTGGT
CCGAGAGCAAGTTGGTTCCTTATTCGTTCACTGTAGGTTCGGCGTAAGATTGTCTGATTT
ATTGGGAGAATATGAGATTGATTCTAACGGGTGTCCTTTCACTATCAAGCTAGCAGAGAG
AAGAAAGCACGAATCAGAATGCGAGTATGCTGCAGTTACCTGCCCCAACAATCCAGCTTG
CCCACCTATGTTAAAAAGACACTTGCAAGAACATTTAGAAACCTGCAAGCACATGAAATG
TCCCAATCATAAATTCGGATGCCTTTTCGTTGGCGACCAAGACAGTTGTGCCGATCATGT
CAAAACTTGCAAGTTTGAGATGGCAAAGGACTTTCTTCAGCTGACGCAGGATAGAATCAA
TGAATTAACTTTAGATATGAGACAAAGAGATGAAGAAAATAGTTTCCTCAGATCTATGTT
GTCAAAAACTGCAGACAGATTGGATGAAATGGAAAAAGCATATGAAGTAAAAATTGAGGT
TTTGACACTAAACCAGAACAAACTCACGGACGAGCTACGTCAAATGAGACAAGATACTGC
CATTATATCAAATGAACTACAGGATCTCAATACAAAGTTAAATATGGGTGCAATAGGAAT
GTACGATCCACAACAAATTTTCAAATGCAAAGGAACGTTCGTCGGACACAGTGGTCCGGT
CTGGTGTCTATACGTGCACGGAGATCTCCTGTTCAGTGGTTCTTCGGATAAAAATATCAA
AGTATGGGACATCAGTAAATTAGAGGAAGTCAATTCCGTAGTGGCTCATGAAAATGCAGT
GTGCACTTTGGTTTGCTCTTACAACATGCTATTCAGTGGATCTTTGAAAAACATCAAGGT
GTGGACGATCGAAGATTCCAAATTAACTCTCAGACAAGAATTGAAAGGTTTAAACCACTG
GGTTCGAGCTCTGGTTGCTTCACAAAATTATATTTACAGTGGCTGCTATCAGACCATACA
GATATGGGATGTACGTACACTAGAATGTGTCCGAGTTCTGGAGACATCAGGAGGAAGTGT
GTACTCTATTGCTGTAACTAACCATCATGTCTTGTGTGGTACATATGAGAATGTTATACA
CGTTTGGGATGTTGGAAATTATGACCAAGTTGCCACCTTGACCGGACATGTCGGCACAAT
CTACTCTCTTTCTGTATTGAGCACGCCTGACCAAACCAAGGTGTTCAGTGCTTCGTATGA
TCGCTCTCTGAGGGTTTGGAGCATGGACAATATGATTTGTACACAAACACTAATCAGACA
TCAGGGTAGTGTTACTTCACTTGCTGTCTCGAGGGGCCGAGTATTTTCTGGCGCTGTTGA
TTCGACTGTTAAAGTGTGGCAGTAAATGAATGAAACTCGCAGCAAAACATTAAAAAACAG
TCAAATGTGCTGTTGTATATGTAAAGGTACTATTTCATCGGTCAATGGCAAGAAAATTAT
GAAGTCTGCCGTATGTATTTGAATTGCTGAAAGATATTCTGATTTTGGTCCAGCTTGGTG
TTCTACCTGTAGTGGGTCAACGCTAGACATACTAGATATACTATGTTGGGTCAAGGGACC
TTTCTACTCTTTCCTGAATATGAAAACCTCACGTAAAAACTTAATAAATGTTCACAAGGT
TTTTTCCTATTCACACATTGACCTTTTTTTCATTCGTCTTTTTCATTATAACAATTCTTT
AGCGATTATGAATTTCTTGATAGCCTCTAAATTATCAGTTATATATTAAG
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[198-246] 3.2E-8 - T[273-320] 9.7E-6 |
| Pfam |
Znf-RING_LisH (IPR027370) - T[202-226] 3.5E-6 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[202-235] 10.763 |
| SMART |
Znf_RING (IPR001841) - T[202-235] 7.6E-5 |
| SUPERFAMILY |
TRAF-like (IPR008974) - T[254-324] 9.81E-10 |
| ProSiteProfiles |
Znf_TRAF (IPR001293) - T[291-361] 9.239 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[435-528] 3.2E-12 - T[529-695] 1.1E-37 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[447-695] 3.4E-59 |
| SMART |
WD40_repeat (IPR001680) - T[454-491] 2.5E-8 - T[494-530] 2.1 - T[535-571] 3.6 - T[574-611] 0.069 - T[614-655] 2.6E-4 - T[658-695] 1.9E-4 |
| Pfam |
WD40_repeat (IPR001680) - T[456-491] 2.9E-6 - T[617-655] 2.5E-4 - T[661-694] 0.013 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[461-695] 38.441 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[461-500] 12.948 - T[621-664] 10.308 - T[665-695] 11.377 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[478-492] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[478-492] 5.8E-6 - T[642-656] 5.8E-6 - T[682-695] 5.8E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| FBXW7_HUMAN | 30.328 % | 112 | 1.19E-25 |
| FBW1A_HUMAN | 26.838 % | 110 | 2.22E-25 |
| TRAF7_HUMAN | 57.636 % | 694 | 0 |