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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S6...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S699.g13392.01.t

Possible name(s)

TMED10; TMED4; TMED9

Gene model

Harore.CG.MTP2014.S699.g13392

Location

S699 [22,377 / 25,579]

Sequences

Amino acid sequence

Length: 283

>Harore.CG.MTP2014.S699.g13392.01.p
MFYLYIYVNCKGKMEYNLLIIILALSAFCGNAIHFKVPVNTEKCLKEEIHKDVLVKGEFE
ITSMAGVKVDLLVTDSNSHILYQKEEAAEGKFAFTTDDYDMFQICFKSKSEVKGRLPDQD
VRLVLKRGVEAKNYDDIAKTEKLKPLEVELRRLEDLSESIVSAFAYMKKREEEMRDTNES
TNSRVLYFSIFSMLCLIGLATWQVIKDSRKGRNIFSKLCFFNVNYLTEFYCYFRLKILLP
ATVVHDFLDNLLYHWREFKSQIRTDLLIYWTPNDKSIEVSKVE

Nucleotide sequence

Length: 1,534

>Harore.CG.MTP2014.S699.g13392.01.t
ATGTTTTACTTGTATATATACGTAAACTGCAAAGGTAAAATGGAGTACAACTTGTTAATT
ATTATATTGGCTCTATCTGCTTTCTGTGGAAATGCAATACACTTCAAAGTTCCGGTCAAT
ACAGAAAAATGTTTAAAGGAAGAAATTCACAAAGATGTGCTAGTGAAGGGAGAATTTGAA
ATCACATCAATGGCTGGAGTGAAAGTTGACCTTTTGGTCACTGACTCAAATAGTCACATA
TTATATCAGAAGGAAGAGGCGGCAGAGGGAAAGTTTGCCTTTACAACAGATGATTATGAC
ATGTTCCAAATTTGTTTCAAGAGCAAAAGTGAAGTAAAAGGGAGGCTTCCTGACCAGGAT
GTGAGACTGGTTTTGAAACGAGGAGTAGAAGCAAAGAATTATGATGATATTGCAAAAACA
GAGAAGTTGAAACCTCTTGAAGTTGAACTACGAAGGCTAGAGGACCTCTCAGAGTCGATT
GTCAGTGCCTTTGCGTACATGAAAAAACGAGAGGAGGAAATGCGCGATACCAATGAATCC
ACAAATTCCCGTGTATTATACTTCAGCATCTTCTCGATGTTGTGTCTGATTGGACTGGCT
ACATGGCAGGTTATTAAAGACTCTCGAAAGGGAAGAAACATATTTTCAAAACTATGTTTC
TTTAACGTTAACTATTTAACAGAATTTTATTGCTATTTTAGGCTAAAAATATTACTACCT
GCTACTGTAGTGCATGACTTCTTGGATAATTTGCTTTATCACTGGCGGGAATTTAAATCA
CAGATAAGGACTGATTTGTTAATATACTGGACCCCGAATGATAAATCCATTGAAGTGTCC
AAAGTAGAATGAAGGGTTACCTCGTTCTCTTTAAACTATATGCAAAGCTCTACTAGTTGA
ATGTTGTTGCAGATACATTTTGTTTATACTGACAATGTGTTTTGAAGAGATTGTCCTGGT
TGGAATACCATCAATTATTCGGTGTTGTTAATTGGTACCTGCTGTATGAAGGAGGTTTGG
TTCATAGATTGCAAATTTACAGTTTGTTGTTACTCATTTTCAATAATTAGTAATTCTGGT
GATACGTGTTGTCCATTTTTTCGAGAGTATTTTGCACTTCAGCTTGGACTTGCTCACAGA
AAATAAAAGATATTTCTTATTACTTGGACTCTGATTGTAAAGGTTTAAAACACAAAGCAT
ATATATTTCTACTTTGGCACAGCATTAGGTTTGTTATACTTGCTGATTGTTGTGACGAAC
TCAGACTGCATAGGAATTATCTTTAAAATCATATTTCATTTAGTACACTGTCCAACAACT
AACCTAAATTGTAGCTGCACATACTGTGTTTATGATACAGCACTGTATTAGAATTAAATG
AATATTTCCTCATGTATAAGTTTATGTGCTTAGGAATAGTTCTGATGACTGTCCGAATCC
AGATTTTTGTTTTGGATCGAGTTTAGATGTATATATTTTCTATGACTATTAATATTAAGT
AGTTTGTTTGATTATAAAATTTTACTTTAAATGG

InterProScan

PANTHER
TMP21-related (IPR015720) - T[16-205] 4.7E-70
SMART
GOLD_dom (IPR009038) - T[32-206] 1.5E-56
Pfam
GOLD_dom (IPR009038) - T[32-204] 2.5E-44
ProSiteProfiles
GOLD_dom (IPR009038) - T[42-152] 14.721

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
TMED9_HUMAN 30.693 % 95.5 1.76E-23
TMED4_HUMAN 30.412 % 91.3 6.07E-22
TMEDA_HUMAN 70.621 % 256 4.3E-86