- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g52297.01.t
Possible name(s)
LIN28B; YBX1; YBX2
Gene model
Location
chrUn [320,344,290 / 320,351,824]
Amino acid sequence
Length: 330
>Boschl.CG.Botznik2013.chrUn.g52297.01.p
MSDAITTTETISEDDVKSEKKVLATHCTGVVKWFNVRNGYGFINRDDNKEDVFIHQTAII
RNNPRKYLRSVGDGEIVEFDVVEGEKGLPEAANVTGPDGAPVQGSKYAADRRRYRPQYRR
RPRNAMAPRRDNAAQEGDSREGEEGGEQDPQDRPPQRRYNRRRPPWFRNRRTHPNENGET
QEGDEKPEGEENGEQQRPRRQRPRRPRRPRPPQEEGEGGAGEGDAKVNGDDAGERPPPPR
RRRYRPRRGPNPDGETNESKEGEEQQGEQGEDKKPPQRRRYRPRRPKGPRTSKSEGEGEV
TKEAPAQNGSAEPQPAVAAGPPPPPVEAAA
Nucleotide sequence
Length: 993
>Boschl.CG.Botznik2013.chrUn.g52297.01.t
CATGTCGGACGCCATTACAACCACAGAAACCATCTCTGAAGATGATGTGAAGTCCGAGAA
GAAAGTTCTCGCCACACACTGCACTGGTGTTGTGAAGTGGTTCAATGTCCGTAACGGCTA
TGGATTTATCAACCGCGATGACAACAAGGAAGACGTGTTCATCCATCAGACCGCCATAAT
TCGCAACAACCCGCGCAAGTACTTGCGCAGTGTTGGGGACGGCGAAATTGTCGAGTTTGA
CGTGGTTGAAGGCGAGAAGGGCTTACCCGAAGCTGCGAACGTAACTGGACCGGACGGTGC
TCCAGTCCAGGGCAGCAAGTATGCAGCGGATCGCAGAAGATACCGGCCACAGTATCGCCG
GCGTCCAAGAAATGCAATGGCGCCGCGACGCGACAATGCCGCTCAGGAGGGGGATTCCCG
CGAGGGGGAAGAAGGGGGTGAGCAAGATCCGCAGGACCGGCCCCCTCAGAGGCGATACAA
CAGGAGACGTCCCCCGTGGTTCAGAAATAGACGCACTCACCCGAATGAGAACGGGGAAAC
CCAGGAGGGTGACGAAAAACCCGAGGGCGAAGAGAACGGCGAACAGCAACGCCCGAGACG
TCAGAGACCCCGTCGTCCCAGAAGACCGAGACCCCCCCAAGAGGAAGGGGAAGGTGGCGC
GGGAGAAGGTGACGCCAAAGTAAATGGCGATGACGCCGGTGAAAGACCGCCGCCGCCTAG
AAGACGACGTTATCGCCCACGTCGTGGTCCGAACCCGGACGGTGAGACGAACGAAAGCAA
GGAAGGCGAGGAACAACAGGGTGAGCAGGGCGAGGATAAGAAGCCCCCCCAGCGCAGACG
ATACAGACCTCGCCGCCCGAAAGGTCCCAGGACATCCAAGTCGGAGGGCGAAGGCGAAGT
TACCAAGGAGGCTCCTGCTCAGAACGGCAGCGCCGAACCTCAGCCCGCCGTTGCAGCAGG
GCCGCCACCGCCACCCGTTGAAGCCGCCGCGTA
| SUPERFAMILY |
NA-bd_OB-fold (IPR012340) - T[23-96] 1.61E-20 |
| CDD |
CSP_DNA-bd (IPR002059) - T[27-96] 1.48247E-21 |
| Pfam |
CSP_DNA-bd (IPR002059) - T[27-96] 4.2E-23 |
| SMART |
CSD (IPR011129) - T[28-97] 4.4E-21 |
| PRINTS |
CSP_DNA-bd (IPR002059) - T[29-44] 4.3E-19 - T[50-59] 4.3E-19 - T[69-87] 4.3E-19 |
| ProSitePatterns |
Cold-shock_CS (IPR019844) - T[40-59] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| YBOX1_HUMAN | 55.102 % | 165 | 1.59E-48 |
| YBOX2_HUMAN | 73.737 % | 156 | 1.0E-44 |