- Transcript 'Harore.CG.MTP2014.S6...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S649.g11389.01.t
Possible name(s)
LIN28B; YBX1; YBX2
Gene model
Location
S649 [25,446 / 31,206]
Amino acid sequence
Length: 383
>Harore.CG.MTP2014.S649.g11389.01.p
MSAVEIPEEVHNDEPVKAEKKVIASHCTGVVKWFNVRNGYGFINREDNKEDVFIHQTAII
RNNPRKYLRSVGDGEMVEFDVVEGEKGLPEAANVTGPEGAPVQGSKYAADRRRYRPRYRR
SRQSSNNQVREIGEEGGAKQQENDDSIEGGQERPPPPRRYRRRPWYRRPRNIPQDGQTVE
QGEEVKEEDGEDKPQRRPRRPRPRRPRKPIAGQEQQEENTEGGEDQANGEEGVERPPPPR
RRRFRPRRPRLPRQEDGENQVENGEGQGEQQEQQSRYRPRRFRTRRPRGPPRPVKSGDEG
EAIAPTKQDNEVSQVNKKSTIRIQCKLSYRYRVHVLSLHILDPYSPHFVQGFGEIQWPWL
WELIFINLVCNISEIPVFGLLIV
Nucleotide sequence
Length: 2,326
>Harore.CG.MTP2014.S649.g11389.01.t
CAACACATGATGCTTGGAGGGTAACCATTACGCAGCTGTTGGTTTGAAGTATTTCTTTGT
TTGTTTTATTATAACTGCCGCGTTTTATTTTTTTTATTAAAAGTTGTGACGTGCAAACTG
TACGTTGCGCTCTCTCGACGCCATTAACATCTAGCGACGCTGAAGTAGGAGCAACATCGG
AAAATAAGGTTTTTCGGGGATCCAATAACATCGCCCTAGGTTAACGTCGAAACATCATGT
CTGCCGTTGAGATACCTGAAGAAGTCCATAACGATGAACCTGTGAAGGCGGAAAAGAAGG
TTATCGCCTCTCACTGTACTGGTGTAGTAAAGTGGTTCAATGTCCGTAATGGTTATGGCT
TCATAAACAGAGAGGATAATAAGGAGGATGTATTTATCCATCAAACTGCAATCATTCGGA
ACAATCCACGAAAGTACCTACGCAGCGTAGGAGATGGAGAAATGGTTGAATTTGATGTGG
TCGAGGGAGAAAAGGGACTTCCTGAAGCTGCTAATGTTACTGGACCTGAGGGAGCCCCTG
TACAAGGCAGTAAATATGCTGCTGATAGACGTAGATACCGACCACGATACCGCAGATCAA
GACAATCGTCCAACAATCAGGTAAGAGAAATTGGGGAAGAGGGGGGTGCAAAACAGCAGG
AGAATGATGATAGTATTGAGGGTGGGCAGGAGAGACCGCCACCACCTAGGAGGTACAGGA
GACGGCCGTGGTACCGTCGACCAAGAAATATTCCTCAGGATGGTCAAACTGTAGAGCAAG
GGGAGGAGGTTAAAGAAGAAGATGGAGAAGACAAACCCCAGCGTCGTCCTAGGCGTCCAA
GACCACGTCGTCCGAGGAAGCCCATTGCCGGGCAGGAGCAACAGGAAGAGAATACCGAAG
GTGGAGAGGATCAAGCCAATGGTGAAGAAGGTGTTGAACGTCCTCCACCACCTCGCAGAC
GTAGATTTAGACCACGTCGGCCCCGTCTCCCTCGTCAAGAGGATGGAGAAAATCAAGTGG
AAAATGGAGAGGGGCAAGGAGAGCAACAAGAACAGCAGAGCAGATATCGCCCCCGTAGAT
TTCGTACAAGGCGCCCAAGAGGTCCGCCACGGCCAGTAAAGAGTGGCGATGAAGGAGAGG
CAATTGCTCCAACAAAGCAGGACAATGAAGTCAGTCAGGTCAACAAAAAATCAACTATCC
GCATCCAATGTAAATTGTCATACAGATACCGTGTTCATGTTCTTTCACTGCATATTTTGG
ATCCATACTCTCCACACTTCGTACAAGGTTTTGGTGAAATACAATGGCCCTGGTTGTGGG
AATTAATTTTTATTAATCTTGTTTGTAATATTTCTGAAATTCCCGTCTTTGGATTATTGA
TTGTCTAATTTAAGTCGAGCAGAAAGCTAATTTCGTTCATTCTACTATAAGACTTCTAAT
ATAGCAGCAACAAAAGATTCTTGTCTAATGTTTGCCTCCATAACGCCAGACATTTCAAGG
TAAAAAATTAATGAATTCGAACAGTTGTTTTGCATGCGTGATTCTATGTAGTGACCTGTA
ATTTAAGATGTGGGTCTTGACAGTTGTAGTGTTGTAGGCTATATAACATTATATCCGTAG
CTAGAAAACGTCGCCCTGAGACTGTCACCATCTGTAATTCTATGTTCTGCCATTTAATTT
AGTGGTTTGCCATTGTTGCTGTCGTTATATGAAAAAAATTCTTTCCCAGAGAGTTGAAAA
AATTATAAAATCTACCAATTCCCTAATTGCAATTGCTATAAACCTCATCAAACGTACTAG
AACCATTCTGGAGTAGCTTTCCAAATATTACTGCTAAATCTATCAGCCCAATCACCCTTT
GTAGGGTGTTTTATACCAAAGACTGAATCCCTCACATAGTTACCAGTGATCTTTCCCTGC
CCATTGCAGATATCAAACCTCACCAATCGAAGACTTTGCTTTTTTGTTTTTCAATTTTTT
TTTACCTATTGCTAATTTTCGGTTGCTGCTCCACTGTAAGCCCAAATTAAACCTTCTCCT
TCAGAGTCCAGCTCTAACTTGAAATTTAAAAGCTCCTCCTGTAGTTGGAAAGATGGTGTC
ATGTAATAACTTGATATTGCGTCGCTTTATTTTTGTAGAAAATCTTCATAGGAAGCATAT
TATAATTTAACTGGTGTTGTTAATTTTCATTGCAGTTTTCGGCCCTTTTTTTTCAGCGAG
CCTAATAAAACATACACCTCTGGGAAATACAGGGTATATCTTTTTTAAGAGAAAATTTAA
ATTTTGGAATCTTTTAAGAATAGGGCGAACCAATGGAGATTCGGAT
| SUPERFAMILY |
NA-bd_OB-fold (IPR012340) - T[24-96] 5.88E-20 |
| Pfam |
CSP_DNA-bd (IPR002059) - T[27-96] 1.0E-23 |
| CDD |
CSP_DNA-bd (IPR002059) - T[27-96] 6.06644E-21 |
| SMART |
CSD (IPR011129) - T[28-97] 5.6E-21 |
| PRINTS |
CSP_DNA-bd (IPR002059) - T[29-44] 3.9E-19 - T[50-59] 3.9E-19 - T[69-87] 3.9E-19 |
| ProSitePatterns |
Cold-shock_CS (IPR019844) - T[40-59] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| YBOX1_HUMAN | 59.195 % | 163 | 3.43E-47 |
| YBOX2_HUMAN | 41.696 % | 141 | 1.47E-38 |