- Transcript 'KH2012:KH.C8.766.v1....' >
- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'KH2012:KH.L116.14.v1...' >
- Transcript 'KH2012:KH.L19.3.v2.A...' >
- Transcript 'Harore.CG.MTP2014.S6...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S63.g09667.01.t
Possible name(s)
COL12A1; FNDC7; PTPRB
Gene model
Location
S63 [191,258 / 199,508]
Amino acid sequence
Length: 1,144
>Harore.CG.MTP2014.S63.g09667.01.p
MASLQRQSTHFKLSLQRLAQYSIDKEQPFFRKLEPVSLGTYPPQTTVMGIQLKHKCRKNA
RILLLIYAKIELNTKSNLHSLLGFTGSFASNQSTTIPWSTNDSSPSNNTDTISADPVTTV
SALGESITYETVLQTIAETTRPETTTYETTPQTTEETTPPETTTNETTPQTTEETTQPET
TTNATTEGSVELETTTYETIPQTTEGTTQSYGLTTITLPRMISSVNITDKSSNGFRIKWN
AITGAESYNVTIFYASNNLTVTTAMFSIDYIETSANVTGLQTGEWYTLKIRASNQAGSGK
AYQLVLTTALPTTPKPILQEVSDNSFQVTWQAMPGAHSYIVTLYKVDALLVIPDSPQNLT
INYLLNNGIAVSWSSVISAEFYKVQVQHRFNNSLVQSSNSPDNVTNTDTVIMGLTPGGLY
KVVVSAVNEAVLPKTTAPIISDVGLRSFSVSWLARIGSSGYYVIVLLNNTEIQRNSFGGN
NAVIDNLSPGVTYNVSIQVSYPGGLSEVSQSISQITVPDKPSKIEIIKLYEDGFDVMWSP
VRGADFFQIQILKEKSALTNIEGDGNMTSTSTRVSRLTPGGIYEIRVKAYNNHVGAGPQS
SVSSSTVLPSTSRPVISSPSQNSFSVSWTQKNGATSYIFHVLADSTLLPTVEVQTTPYVF
TNLQPGTLYNITVSVVYPGGRSPNSVSNTQFTVPAEPTASFRGVSKYSFYFKWGLVKGAT
TYSYNCKHKESGSQVGIGTTAGNEIFITSLQIQTEYVCYVHAGNEAGSSNEVSATVKTAQ
RDCESQPCQNGGTCTDRSDGYTCSCILGFEGSYCEKGRSIASVQCITNIFKLDGNLTYVS
RFDNDNLIAVECDVEVQKVTQMVNLTDVSSAEVEATVEILQVLTSDADTLTMEETNNAAE
FIVDVTLALNKNQAEVTPVILFEIVATTSHLSEAFSSPSDPGPNPPGPSPSIGPPTTTLS
PEVVRAQEVELKQNLVMALSSLSNEVMLSENTTELKVETENIIAQILEIPTRSAAGRNSE
SENRQSDSVSFTPQIQPTNQEESIQPINITLPGGAIDFAGEAAKREGAPLRVTFFLHKDS
SLFPSNQTVDMVVSAELAKGIAIQNLEEPIVIQHPGEKSKVEKSPINKTFVSWACSKCSK
RVNL
Nucleotide sequence
Length: 3,435
>Harore.CG.MTP2014.S63.g09667.01.t
ATGGCTTCGTTACAAAGACAATCTACACATTTCAAGCTTAGTTTACAGAGATTGGCTCAG
TACTCGATAGACAAAGAGCAGCCGTTCTTCCGGAAGCTTGAGCCAGTAAGTCTCGGAACG
TATCCCCCGCAGACTACTGTAATGGGGATTCAGTTGAAACATAAATGCCGAAAGAATGCT
CGAATACTGCTTTTGATTTATGCCAAAATTGAACTAAATACTAAATCGAACTTACATTCG
CTATTAGGATTCACGGGATCGTTCGCAAGCAACCAATCCACTACTATACCATGGAGTACA
AACGATTCAAGTCCAAGCAACAATACAGACACTATCAGTGCCGACCCAGTTACAACAGTA
TCAGCTTTAGGAGAGAGCATCACATATGAAACTGTTCTTCAAACAATTGCAGAGACAACT
CGGCCAGAGACCACCACATATGAAACCACCCCTCAAACAACCGAAGAGACAACTCCGCCA
GAGACCACCACAAATGAAACCACCCCTCAAACAACTGAAGAGACAACTCAGCCAGAGACC
ACCACAAATGCAACAACTGAAGGGTCTGTGGAACTAGAGACCACCACATATGAAACAATC
CCCCAAACAACTGAAGGAACAACTCAATCTTATGGTCTAACCACAATCACATTGCCAAGA
ATGATATCCAGTGTAAATATCACAGACAAATCTTCAAATGGATTCAGAATAAAATGGAAT
GCCATCACAGGCGCTGAATCCTACAATGTCACAATTTTTTACGCCTCAAACAACTTGACT
GTCACGACCGCCATGTTTTCTATAGATTATATTGAAACATCTGCTAATGTCACTGGCCTA
CAGACTGGAGAATGGTACACACTGAAGATAAGGGCATCGAACCAAGCTGGCTCTGGCAAA
GCTTACCAATTAGTATTAACAACAGCATTGCCAACTACTCCGAAACCAATCTTGCAAGAA
GTCTCAGATAACAGCTTTCAAGTTACGTGGCAAGCAATGCCAGGAGCACATAGTTATATA
GTTACCCTGTACAAAGTCGATGCACTATTAGTAATTCCTGATAGTCCGCAGAATCTTACG
ATAAATTATCTTCTCAACAATGGAATCGCTGTGAGCTGGTCTTCAGTCATCAGTGCAGAA
TTCTACAAAGTACAAGTGCAACACAGGTTCAACAACAGCTTAGTGCAGAGCTCAAACAGT
CCAGATAATGTTACAAATACAGACACGGTTATAATGGGATTGACTCCAGGTGGACTGTAC
AAAGTTGTGGTGTCTGCAGTGAATGAGGCTGTTCTCCCTAAAACGACAGCCCCAATCATT
TCGGATGTTGGACTCCGCTCTTTTTCAGTATCCTGGTTAGCCAGAATTGGATCTTCTGGA
TATTACGTTATTGTATTATTGAATAACACTGAGATACAGAGAAATTCCTTCGGAGGGAAT
AATGCAGTGATTGATAATTTATCTCCGGGTGTGACGTACAACGTTTCCATCCAAGTTTCT
TATCCAGGAGGACTGAGTGAAGTTAGTCAATCTATAAGTCAAATCACAGTTCCTGATAAG
CCGAGCAAGATTGAAATTATAAAACTCTATGAAGATGGGTTTGATGTCATGTGGTCTCCT
GTCAGAGGTGCTGATTTTTTCCAAATTCAAATATTGAAGGAAAAGTCTGCGTTGACCAAT
ATAGAGGGTGATGGAAACATGACATCTACCTCCACACGTGTATCTCGTTTAACACCTGGT
GGTATATATGAGATCAGGGTAAAAGCATATAACAATCATGTTGGTGCTGGACCTCAGTCT
TCAGTGTCATCTTCTACTGTTTTGCCATCAACCAGCAGACCAGTTATATCAAGTCCTTCC
CAAAACTCATTCAGCGTTTCTTGGACACAAAAGAACGGAGCAACATCGTACATATTTCAT
GTACTGGCCGATTCGACCCTTTTACCGACAGTAGAGGTTCAGACAACACCGTACGTTTTC
ACTAATCTACAGCCTGGGACGCTTTACAACATCACTGTTTCAGTCGTGTACCCTGGTGGA
CGGAGCCCTAACTCTGTATCGAACACCCAATTTACCGTTCCTGCTGAACCAACAGCCAGC
TTCCGTGGGGTTTCAAAATACAGCTTCTATTTCAAATGGGGGCTGGTCAAGGGCGCAACA
ACTTATTCTTACAACTGCAAGCATAAAGAAAGTGGATCCCAAGTCGGTATCGGTACGACA
GCCGGAAATGAAATCTTCATTACCTCGTTACAGATTCAGACAGAGTATGTATGTTATGTT
CATGCTGGAAACGAGGCAGGTTCAAGTAATGAAGTCAGCGCAACAGTTAAAACAGCGCAA
CGTGATTGTGAATCCCAGCCATGCCAAAACGGGGGTACATGCACTGACCGCTCAGACGGA
TACACTTGCTCTTGCATTCTTGGATTCGAGGGTAGCTATTGCGAAAAGGGACGCTCTATT
GCTTCTGTACAATGCATAACAAATATTTTCAAACTTGATGGGAACCTGACATATGTTTCG
AGATTTGATAATGACAATTTGATAGCGGTGGAATGTGATGTCGAAGTTCAAAAAGTAACC
CAGATGGTCAACCTCACTGATGTGTCTTCGGCAGAAGTTGAAGCAACAGTGGAAATATTG
CAAGTACTCACATCAGATGCGGATACACTGACAATGGAAGAGACGAACAACGCTGCTGAA
TTTATAGTTGATGTCACTTTGGCCTTGAATAAAAATCAAGCAGAGGTGACTCCAGTGATC
CTATTCGAAATAGTTGCGACAACGAGTCATCTGTCCGAGGCTTTCAGCTCACCATCTGAT
CCCGGTCCTAACCCACCAGGACCTTCTCCGAGTATCGGACCACCGACGACCACTTTGTCC
CCGGAAGTTGTCCGCGCACAGGAAGTCGAACTGAAACAAAACTTAGTGATGGCGTTATCG
TCGCTGTCAAATGAGGTTATGCTATCAGAAAATACTACTGAACTAAAAGTAGAGACGGAA
AATATAATTGCACAGATACTGGAAATACCTACTCGATCAGCAGCAGGACGAAACAGCGAA
AGCGAGAATCGGCAATCGGATTCAGTGTCATTCACTCCACAGATTCAACCCACAAACCAA
GAAGAATCCATACAGCCTATAAACATAACCTTACCTGGAGGAGCTATAGATTTTGCTGGA
GAAGCGGCCAAACGGGAGGGCGCCCCCCTCCGTGTCACGTTCTTCCTCCACAAGGATTCT
TCCTTGTTTCCTTCAAATCAAACGGTTGATATGGTTGTGTCAGCCGAATTAGCCAAAGGA
ATAGCAATTCAAAATCTCGAAGAACCAATCGTTATACAACACCCTGGGGAGAAGAGCAAA
GTTGAAAAATCTCCAATAAACAAAACTTTTGTAAGTTGGGCTTGCAGCAAATGCTCAAAG
AGAGTCAACTTATAA
| Gene3D |
Ig-like_fold (IPR013783) - T[214-316] 2.4E-9 - T[351-436] 2.7E-9 - T[437-518] 9.9E-6 - T[519-610] 2.5E-9 - T[611-700] 3.2E-10 |
| SUPERFAMILY |
FN3_sf (IPR036116) - T[218-346] 6.36E-12 - T[353-521] 1.08E-15 - T[516-695] 5.25E-18 - T[688-771] 9.11E-6 |
| SMART |
FN3_dom (IPR003961) - T[219-299] 6.8E-4 - T[353-431] 0.0067 - T[432-506] 0.03 - T[518-597] 1.6E-6 - T[608-682] 1.2E-6 - T[694-769] 7.1 |
| ProSiteProfiles |
FN3_dom (IPR003961) - T[221-312] 13.034 - T[355-446] 11.819 - T[520-609] 11.353 - T[610-696] 14.004 |
| CDD |
FN3_dom (IPR003961) - T[223-300] 5.35843E-4 - T[353-430] 5.56333E-5 - T[436-516] 3.28381E-5 - T[518-607] 2.69806E-6 - T[612-692] 1.97285E-7 |
| Pfam |
FN3_dom (IPR003961) - T[223-300] 1.1E-6 - T[354-430] 2.1E-5 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[779-815] 20.098 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[780-815] 5.3E-4 |
| SMART |
EGF-like_dom (IPR000742) - T[782-815] 1.8E-6 |
| Pfam |
EGF-like_dom (IPR000742) - T[783-813] 5.8E-6 |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[794-805] . |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[803-814] . - T[803-814] . |
| Protein Name | Identity | Bit Score | e-value |
|---|