- Transcript 'Harore.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S5.g02306.01.t
Possible name(s)
CELF3; CELF4; CELF5
Gene model
Location
S5 [94,446 / 109,641]
Amino acid sequence
Length: 594
>Harore.CG.MTP2014.S5.g02306.01.p
MVMAMHGATQVLQHTLTSGGGIGGCGAPSTSLGFQVINGVVPMAANAHIPMDASLLPFGT
GFVQPNPPTSTHYITTTQAQPQLCSTPSNVSMKEFQDKDDDAVKLFIGQVPKNWTEHELR
PIFEPYGEIYELSVLHDKYTGMHKGCAFLTYCKKTPAINAQNFLHEQKTLPGMNHPMQVK
PADTVNKGEDRKLFVGMLGKRQTEEDIRQLFEKFGHIEECTILRTPDGQSKGCSFVKLST
STGARAAIDALHGSQTMPGASSSIVVKLADTDKERAIRKMQQMAQNYGLVSPVTLQLGPY
GSPLPQMAQHPVMATTPGVMPAAAGWSPLATAFGTATQLGQMTNLGPASAIMQATNGHGA
QIAGIPSTPQSPVASITTLNLVQPPMASQSGMTTPQEIYPLQAYPGTRLAAPVVTTTHSM
TPSLAVHNGSSSDPSPMTLCASQTPPTMEMIQAPAYPQPYTVVYVPPGQYAPVPQQLTPT
HLTPITTTQGAPALVNSPTAPQKEGPEGCNLFIYHLPQEFTDADLANVFQPFGNVISAKV
FIDRATNQSKCFGFVSYDNPVSAQTAIQTMNGFQIGMKRLKVQLKRPKEQSRPY
Nucleotide sequence
Length: 3,862
>Harore.CG.MTP2014.S5.g02306.01.t
AGAAATATTTAATAAATTAAATAATTTCCAAGTACTCCTACATCAACCCAAGGTTTTCTT
TTGCCACTGTGATATTTCATTTCATTTGAATTTTTACAAAACTGCTTCAAGATGGTGATG
GCAATGCATGGTGCTACTCAAGTCTTACAACACACGCTGACATCGGGTGGCGGGATCGGA
GGTTGCGGAGCTCCATCCACCAGTCTGGGCTTTCAGGTCATAAACGGGGTCGTCCCGATG
GCAGCCAACGCCCATATTCCGATGGATGCATCTTTGCTTCCCTTTGGCACAGGATTTGTG
CAACCGAATCCTCCAACATCTACTCACTATATCACAACTACACAAGCACAACCACAACTG
TGTAGTACACCTTCAAATGTTAGCATGAAAGAATTCCAAGATAAAGATGATGACGCAGTG
AAGCTATTCATTGGACAGGTTCCTAAGAATTGGACAGAGCACGAACTAAGACCTATTTTT
GAACCTTACGGAGAAATCTATGAATTATCCGTGTTACATGATAAATACACAGGAATGCAT
AAAGGTTGCGCTTTTCTTACATACTGCAAGAAAACTCCGGCCATAAATGCACAAAACTTT
CTGCATGAACAGAAAACTTTACCTGGTATGAACCATCCAATGCAAGTAAAACCTGCAGAC
ACAGTCAACAAAGGCGAAGATCGCAAATTATTTGTCGGAATGCTGGGAAAAAGACAGACA
GAGGAAGACATCCGGCAGCTGTTCGAAAAATTCGGACACATTGAGGAATGCACCATTTTA
AGAACTCCTGACGGGCAGAGTAAGGGGTGCTCATTCGTGAAATTGTCGACAAGCACAGGG
GCTCGTGCGGCCATTGATGCATTGCATGGAAGTCAGACAATGCCGGGAGCTTCATCTAGC
ATTGTAGTCAAGCTAGCTGACACAGACAAGGAACGAGCGATTCGTAAAATGCAACAGATG
GCACAGAACTATGGTCTTGTAAGCCCAGTGACGCTTCAGCTTGGTCCGTATGGATCCCCT
CTTCCCCAGATGGCACAGCATCCAGTCATGGCCACAACGCCAGGTGTCATGCCTGCAGCA
GCAGGTTGGTCTCCCCTCGCTACAGCTTTTGGTACTGCAACACAACTCGGACAAATGACG
AATCTTGGGCCGGCATCAGCTATAATGCAAGCCACCAACGGTCATGGTGCCCAGATCGCA
GGGATCCCAAGTACTCCACAAAGCCCAGTTGCATCTATCACTACCCTCAATCTGGTCCAG
CCACCGATGGCTTCACAGTCAGGAATGACCACCCCACAAGAAATTTACCCATTGCAAGCT
TACCCAGGTACAAGGCTTGCTGCCCCCGTGGTAACGACGACTCATAGCATGACCCCTAGT
CTTGCTGTTCATAATGGCTCCAGTTCTGACCCGAGTCCCATGACGTTATGTGCATCTCAA
ACTCCACCGACTATGGAAATGATACAAGCTCCTGCTTACCCCCAACCATATACAGTTGTC
TATGTACCACCTGGACAATATGCTCCAGTCCCGCAGCAACTTACACCGACCCACCTGACC
CCAATTACAACGACACAAGGAGCCCCTGCTCTTGTAAACAGCCCCACAGCTCCCCAAAAA
GAAGGTCCGGAAGGCTGCAACCTATTTATATATCACCTTCCACAAGAGTTCACTGACGCG
GATCTTGCAAACGTCTTCCAACCTTTCGGAAATGTTATTTCAGCTAAAGTCTTTATTGAT
CGTGCAACAAATCAAAGTAAATGCTTTGGATTTGTGAGCTACGACAACCCTGTCAGTGCA
CAAACAGCGATTCAAACCATGAATGGATTCCAGATTGGGATGAAACGTCTCAAAGTACAG
CTGAAACGTCCTAAGGAGCAAAGCAGACCTTACTAAACAGCAGACAGTTCATTCTGCTTA
TTTCGAAACCATTAGTTCATTCATGAGTTCAAAATTCCAGAGAATTTTCGTTCATCTATC
ACCATGATAACACTTTAAACCCGGAGGCGCCAATATTTTGAGCGTTCGGAAGACACTTTT
TTTACGATAGGAAGGCAGGTATTATTACACCTATTTCTTCTTTCACACATCAAATGGAGC
TTTATTACCAAGTGAATATTCTGTTATTAAATTGTTGCAAAACTTGACTGTTTATTTCAT
TAACTTTTTTTCTTCGACCTATATCTGATTATATCATTGTATGTCTACTATGATGCTTTA
TATGCTACAGTATATGATGAGTTTACTATACTGCTATGAGCTATATAGTAGTGACAACGT
GACTTTATATAATGATCCTTCAATTTCCACCAATGCTAGATTTAGACTGGGTGAGGCCTC
ATGACATATAAGACCCCTCGTTATATAATTACAGCAAAGGGTCTAACGAAACTTGGGTAC
ATAAAAAAGTAAACAAAGGGCTTAGCCAAAATGTTGAATATTATCATGAGCCGCATATAA
GATGTTAAAGATCCGTGGTTCGACCACTCCTGATATATATTTGCGAAATACATAAAATAT
TGGACGGCCAGCAGTCTTGCTAAGAAAAAGTTTTTCCAGTATACAATACTTGTTTATTTC
AATGTTTATTGGGCAGCTATATTTCTTCATTATCTTCATATATATTAAACTCGTTCTTAT
AAAGGTACTACTAGCTATTTATACAAAAATACAATTTTTTGGAAAACCTTGCCACATGTT
GAGGTTAGTATTCCTGCTCAGTCAACTAACTACAATCATAGCCAATCACTGTTTTTTTTA
TTTCAAGAATTTAACTTGATGTGATAATTTATCTTGTTTGCATTGGTGGTTAAATCAAGA
AGAATATTGTACCGGAGTTTACCGTAAATAAGCCCATGGTTGTCCCTTCCACCCAGCATG
GGTGTTTATTTGCATTCCTCAAACCCTATTTTTTTAATTCCTGTATTTGGGGCTTATATA
CAGGAATTACCGGTGAGACTTACTTGCACAATATTTGCTATGATTTGCTTTATAACTATT
AGCTGAATACTATTTCCCCAATTTTTTTTACGGGATTCACTATGTTTAGCTACTGCGATA
GCTTTTACGCATTCCCTGCTGTGATATTTGTGATGTTTTTACCAATTTTCTGGAAGAACT
TTCTCGTGCAAGCCTAAATTTCGGTGCAATTTTGTTTATAATCAGTAATTGTTTGGTGAT
ATGCCAATACTTTATGATCATTATGAGCAGTGAAATCTTGTTATTAAAAAAGGAAAATAT
ATATAGTATGATCAAAGCTGTTTCTATAGTGTGGACTATGGAGCAGACTTTTTTCATCCT
GGAGCATCTTCAGGCCACTGATATCTCCCCACCAGTATATTATACTTACGAAAATAAGTA
AATCATACAACCAAGTAGGCAATAGCTCTAACCCTTTATACCTTGGGTTCTCAGCGGTGA
ACAAGGTTTCACTGCTTTAGTTTCTTGAATAATTGCAAGCTTTTTTATTACTTTACCTAT
TTCAATTATTTTCTGGACACATTCTTTTCTTCTCTGCAATTTTTTTCGATATTTTTATCC
ATGAAATCTTGTACACATGACATCATCAGTTTGATGACATCACTAAAGTTCATACCTGAA
TCAATTTAATAACAAGGGAGGGGGTCAAACCCTTGTCCATAAGGGGTTATAAGAATATAA
CTGTTCACTGTATTTAAACGAATCATTAAATAATTATGAAATGAGATCATTTTTCTCTTT
GTTCCCACTTTATGATGTCACTAGTGCAATCTTTTATCTACGTAATTTCGAAAGATGCTT
TCTACAGAATGGTCGCTTGCCGCTTTAGGCATGAAGTTATTTAATAGAGGACACCTATTA
TTATTATTATTATGATTATTAT
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[78-184] 4.97E-20 - T[189-281] 2.73E-42 - T[506-590] 2.73E-42 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[89-187] 5.7E-22 - T[188-278] 3.9E-25 - T[479-586] 6.1E-29 |
| CDD |
CELF3/4/5/6_RRM1 (IPR034648) - T[98-184] 4.72766E-60 |
| PRINTS |
Hud_Sxl_RNA (IPR002343) - T[103-118] 6.0E-5 - T[196-211] 6.0E-5 - T[211-223] 6.0E-5 - T[252-269] 6.0E-5 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[103-184] 13.805 - T[191-271] 16.057 - T[509-587] 16.995 |
| SMART |
RRM_dom (IPR000504) - T[104-180] 3.4E-17 - T[192-267] 2.4E-17 - T[510-583] 1.6E-23 |
| Pfam |
RRM_dom (IPR000504) - T[105-170] 7.0E-12 - T[193-255] 2.4E-15 - T[511-581] 9.9E-19 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CELF5_HUMAN | 48.532 % | 432 | 5.54E-147 |
| CELF3_HUMAN | 48.703 % | 455 | 6.22E-156 |
| CELF4_HUMAN | 63.721 % | 305 | 3.91E-97 |
