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TRANSCRIPT CARD

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  1. Region 'REG00001291'
  2. Transcript 'Harore.CG.MTP2014.S5...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S588.g15354.01.t

Possible name(s)

RABGAP1; TBC1D19

Location

S588 [26,195 / 27,800]

Sequences

Amino acid sequence

Length: 534

>Harore.CG.MTP2014.S588.g15354.01.p
MNDHENLSFVISQIVSKLKSTTLQSQLRLGAKREAEKGSVTRATMKGDVMEALKNVGWEK
ILRNAVYRELCRTDAGERCLDPEFRKESLQYLKKAQSNWERRILKSMNSMCTELSIPLAR
KRPNDEQRDLLQKWNEMGTDEPDLSHFRPVYAPKDFLEVIVSLQNDNYNAASVGKDGVGP
EVLRTKSSLLGLIQIPLEIPPLNEFQKIFKELNPKLSQNGVDDSPDCFSQNFATERERMA
KKVIDEKQSAVAQYFLRRGCPTGNRGEIWQLALGVSIDSLSILHYEQLKGYVLQHDLLVD
SLIYKDVKLTATNDDYYFVFEDYLYQALLLFSRDTSVLEHFSRSSATPPKSYIKGKWGQE
EYAVTYPPNGVIPFHGFSMYVTPLCYLYAEPIRLYFTFREMYTRYFQRLHTISSHPQGIV
SLCLIFENTLQSIHPKLFHHLVDIGLQSLRIAFKWLVRAFSGYLATYQLHLLWDRIIGYG
DLRLLPLLAVSIFVFRQSNLLSITSAGSAEAALADISTLCIVPLLQMIFFQTKV

Nucleotide sequence

Length: 1,605

>Harore.CG.MTP2014.S588.g15354.01.t
ATGAACGATCATGAAAATCTTTCGTTTGTTATTTCGCAAATTGTTTCAAAATTGAAATCG
ACAACTCTTCAATCTCAGCTGAGACTTGGAGCGAAACGAGAAGCTGAGAAAGGATCCGTA
ACCAGGGCAACAATGAAAGGTGATGTCATGGAAGCTCTGAAGAACGTCGGGTGGGAAAAA
ATTCTTCGTAATGCCGTGTACAGGGAGCTGTGTCGAACCGACGCGGGTGAAAGATGCTTG
GACCCCGAATTCCGAAAGGAGAGTCTACAGTACTTGAAGAAAGCGCAGAGCAACTGGGAA
CGAAGGATACTAAAAAGTATGAATAGTATGTGTACGGAATTAAGTATTCCGCTTGCCCGT
AAGCGACCGAACGATGAGCAACGCGATTTGCTGCAGAAATGGAATGAGATGGGAACAGAT
GAACCTGACCTAAGCCATTTTCGTCCTGTTTACGCTCCGAAAGATTTCCTCGAAGTTATC
GTGTCGTTACAGAACGATAATTACAACGCTGCTTCGGTTGGGAAGGACGGGGTAGGACCG
GAAGTCTTGAGAACCAAGTCAAGTTTACTCGGATTGATCCAGATTCCACTCGAGATCCCT
CCGCTGAATGAATTTCAAAAAATCTTCAAGGAATTGAATCCAAAATTGAGTCAGAACGGG
GTCGACGATAGCCCCGACTGTTTCTCTCAAAACTTTGCGACGGAACGAGAACGAATGGCC
AAAAAAGTCATAGATGAAAAACAAAGCGCAGTTGCACAATATTTCTTACGAAGAGGATGT
CCTACTGGAAATCGTGGTGAAATATGGCAGCTAGCACTAGGTGTCTCTATTGATTCTCTC
AGTATTCTCCACTACGAACAGTTGAAAGGTTACGTCCTCCAACACGACCTTCTCGTTGAC
AGTCTGATTTATAAAGACGTAAAATTAACAGCTACAAATGACGATTACTATTTCGTTTTC
GAAGATTATCTTTATCAAGCGTTGCTGCTTTTTTCACGAGACACGAGCGTGCTGGAACAT
TTCTCCAGGAGCAGTGCCACTCCTCCTAAATCCTACATCAAGGGTAAATGGGGGCAGGAA
GAATATGCAGTCACTTACCCACCAAACGGGGTGATCCCTTTCCATGGATTCTCGATGTAC
GTTACTCCTCTGTGTTATCTCTATGCTGAACCCATTCGTCTTTACTTCACATTCAGGGAA
ATGTATACACGCTATTTCCAGCGCTTACATACGATATCATCTCATCCTCAAGGCATTGTT
TCGCTTTGCTTGATATTCGAAAACACTCTACAATCAATCCATCCAAAGTTATTTCACCAC
CTCGTAGACATCGGTCTTCAGTCGTTGAGAATCGCTTTCAAATGGCTCGTCCGTGCATTC
TCTGGTTACCTAGCGACGTACCAGCTGCATTTGTTGTGGGACAGGATTATTGGGTACGGT
GACCTTCGACTTTTACCCCTTCTGGCCGTATCAATTTTTGTGTTCAGGCAATCGAATTTG
CTCTCTATAACTTCAGCAGGATCAGCTGAAGCAGCTCTGGCCGATATTTCAACATTATGT
ATTGTTCCACTGTTGCAAATGATATTTTTTCAAACAAAGGTTTAG

InterProScan

SMART
Rab-GTPase-TBC_dom (IPR000195) - T[256-506] 0.0038
ProSiteProfiles
Rab-GTPase-TBC_dom (IPR000195) - T[259-480] 14.256
Pfam
Rab-GTPase-TBC_dom (IPR000195) - T[376-499] 8.4E-10
SUPERFAMILY
Rab-GTPase_TBC_sf (IPR035969) - T[417-527] 2.49E-14

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
TBC19_HUMAN 58.614 % 605 0