- Transcript 'Harore.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S54.g05787.01.t
Possible name(s)
HOXA10; HOXC10; HOXD10
Gene model
Location
S54 [154,648 / 159,183]
Amino acid sequence
Length: 581
>Harore.CG.MTP2014.S54.g05787.01.p
MDFDFGICKIENSTTRALRSSDLVSNGQFIKKQFSVTAIHSKCSVAVLKILEICVSNAPM
TVGTTLVFRRPLNLVQSKNFKSDKPFFSSMPGGIYPSTGIALTSYSSQRRIPARYIQSDK
DNTLRKEEILHPNCHENLPLGLSEHPDSSIEHPRFSSVHENQNDNTMDVRAKTVQYMSPK
GSEIIRPNSVSPTEYCDANNNNNNSNHYMQQSNGHVISAMKMNGFEYSQNPLRIPELNMD
HTSHIMSHDSLLPSSEHLDSNNNNTVIPNKVDYPYTELSNKVGNESQQQQQYIMGADSQS
IQCQNYNQPLIKAEFADVFPPRSTTSDSSEHERHPMASSIHSSTDKSPTNSESLDVDMSY
SEDDKLGGGKGEDPTKHWLTASGRKKRVPYTKYQLLELEKEFHYNQYLSRERRLEVAKTV
NLTDRQVKIWFQNRRMKWKKEKKEEKIRDNIGFTAPAHLLNHHSPGGHFHQPHFSHLPGV
GTHYPRSAAAIAAAAGMGHHPSSAIGPHHPHFNNPMGGHSHGATTHFQHGSYPNGHTAMG
PPNPHQMAAVAADFFSTFQHHHGYPVSRDPSTALQLGCMYN
Nucleotide sequence
Length: 1,746
>Harore.CG.MTP2014.S54.g05787.01.t
ATGGACTTCGATTTTGGAATTTGTAAAATAGAAAATTCGACTACCAGAGCTCTCAGATCC
TCAGATTTAGTGTCAAATGGACAGTTTATAAAAAAGCAATTTTCTGTAACTGCTATACAT
TCAAAGTGCAGCGTAGCTGTTTTAAAAATTCTTGAAATTTGTGTTTCCAATGCCCCCATG
ACAGTCGGTACTACTCTGGTTTTTAGACGTCCGTTAAACCTAGTGCAAAGCAAAAACTTC
AAGTCGGATAAGCCTTTCTTTTCGAGCATGCCAGGAGGAATTTATCCTTCAACTGGAATC
GCCCTGACTTCTTATTCCTCTCAGAGAAGAATACCAGCCAGATATATTCAAAGTGACAAA
GACAATACTCTGCGAAAAGAAGAAATACTGCATCCGAACTGCCACGAAAATCTACCTCTA
GGTTTATCAGAGCATCCGGATTCCTCTATAGAACATCCTCGTTTCTCGTCCGTGCACGAA
AATCAAAACGACAATACTATGGATGTCAGGGCCAAAACGGTTCAGTATATGTCGCCGAAG
GGCAGCGAGATAATAAGGCCCAATTCTGTCTCTCCCACGGAGTACTGCGATGCCAACAAC
AACAACAATAATAGCAATCATTACATGCAACAGTCCAACGGCCATGTTATAAGCGCTATG
AAAATGAACGGTTTTGAGTACAGCCAGAACCCATTAAGAATTCCCGAACTTAACATGGAC
CACACAAGCCACATTATGTCCCACGACTCGTTGTTACCTTCGTCAGAGCATTTGGACAGT
AACAATAATAATACCGTAATTCCTAACAAAGTCGATTATCCTTACACCGAACTATCTAAC
AAAGTCGGGAATGAAAGCCAGCAACAGCAACAATACATAATGGGAGCCGATTCGCAGTCA
ATACAATGTCAGAATTACAACCAACCGCTGATAAAAGCCGAATTTGCAGATGTCTTTCCT
CCGCGCTCGACAACATCCGATTCGTCAGAGCACGAACGGCATCCCATGGCATCCTCCATT
CATTCCAGCACCGACAAATCTCCGACAAATAGCGAATCATTGGATGTTGATATGTCTTAC
TCGGAGGATGATAAATTAGGTGGTGGGAAAGGAGAAGATCCGACAAAACATTGGTTAACT
GCTAGCGGACGAAAGAAGCGTGTGCCATACACCAAGTACCAGTTACTTGAATTGGAGAAA
GAATTTCATTACAACCAATACTTATCCCGCGAGCGACGCCTCGAAGTCGCGAAAACGGTT
AACTTGACAGACAGACAAGTCAAAATTTGGTTTCAAAACAGACGAATGAAATGGAAAAAA
GAGAAAAAAGAGGAGAAAATAAGAGACAACATAGGTTTCACAGCTCCAGCGCACCTCCTG
AACCACCACAGCCCTGGAGGACATTTTCACCAACCTCATTTTTCACATTTGCCCGGAGTA
GGGACTCATTATCCGAGATCGGCCGCTGCCATAGCTGCCGCTGCAGGAATGGGACACCAC
CCGTCGAGCGCTATCGGTCCTCACCACCCCCATTTCAACAATCCTATGGGAGGACACAGT
CACGGGGCAACAACCCACTTTCAGCACGGATCGTATCCCAACGGACATACTGCCATGGGA
CCCCCAAATCCCCATCAGATGGCCGCAGTTGCTGCCGATTTTTTCTCCACGTTTCAACAT
CACCATGGTTACCCTGTATCGCGTGATCCTTCGACTGCACTACAGCTAGGCTGCATGTAT
AATTAG
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[376-443] 3.98E-26 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[381-441] 21.751 |
| SMART |
Homeobox_dom (IPR001356) - T[383-445] 1.3E-27 |
| Pfam |
Homeobox_dom (IPR001356) - T[384-440] 2.6E-21 |
| CDD |
Homeobox_dom (IPR001356) - T[384-436] 3.99222E-23 |
| PRINTS |
Homeobox_metazoa (IPR020479) - T[405-416] 3.1E-7 - T[420-430] 3.1E-7 - T[430-439] 3.1E-7 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[416-439] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HXD10_HUMAN | 67.416 % | 127 | 2.18E-32 |
| HXC10_HUMAN | 68.539 % | 127 | 2.33E-32 |
| HXA10_HUMAN | 58.407 % | 129 | 1.92E-32 |
