- Transcript 'KH2012:KH.C3.709.v1....' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Boleac.CG.SB_v3.S99....' >
- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Harore.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S545.g09713.01.t
Possible name(s)
VPS36
Gene model
Location
S545 [6,652 / 16,370]
Amino acid sequence
Length: 389
>Harore.CG.MTP2014.S545.g09713.01.p
MDRWVWLSGGNKEAALIRQHNIRIYDGEDKTSFEDGSLKLTPTSLIWQDSAKQDCTLCLA
LSLVMQVERAAGGINKSPKIILYLTKASPNKPPGPVAHSKHSFVRLSFKNHGEAEFYNRM
MPALKDRAWEHTSQNVTAENSNQSRGSVEDKRKYRAGIVGIERKIEEKRKETEENISVAF
QDLTKLIEKAKEMVSLSKAIASKIKDKQGDITEDETIKFKSYLLSLGIPNPVTKETHGSG
THYHMQLATEICTALESVMQSSGGIVLISDAYCRINRARGMELLSPEDMINACKAMENMK
LPMKMRTYDSGVTVLQLQSHSEESAVQQTVQLVKDSNCLTAEQLSNILAISVLLAKERLL
LAEKKGKLCRDDSVEGLAFYPNLFLTNNT
Nucleotide sequence
Length: 2,650
>Harore.CG.MTP2014.S545.g09713.01.t
GGGATTGTTCATGTCAGTGTCAGTTAAATTCTGACAAAGTTTTTAGTTTGACCCGGCAAC
TGTGAGGGCCTGTGGGACCCTAGGAAGGAAGCATGAATTTTTGGGGTCAGAAAAGGACAT
TTCAAGACGAAAATTTATATCTAATGTTTACGTTATTGAGAACGAGACTTTCATGGGATG
ATTCATGACAGTATGATGAATATTCTGACCACGTTTTAAGTAAAAATTCCGCAAGTCTTC
ATCAATGGACCGATGGGTTTGGTTATCTGGAGGCAATAAGGAAGCAGCCTTAATAAGGCA
ACATAACATACGAATATATGATGGTGAAGACAAGACTTCTTTTGAAGATGGTTCGCTCAA
GTTAACACCTACTTCTTTAATATGGCAAGATTCAGCAAAACAAGATTGTACTCTTTGTCT
TGCACTTAGTTTAGTTATGCAGGTTGAAAGAGCTGCTGGTGGCATTAATAAGAGCCCAAA
AATCATTCTATATCTAACGAAGGCTTCACCCAACAAACCTCCCGGGCCAGTCGCCCACAG
CAAACATTCTTTTGTACGACTGTCATTTAAAAATCACGGAGAGGCAGAATTCTACAATCG
AATGATGCCTGCATTAAAGGATAGGGCGTGGGAGCATACTTCACAAAATGTAACTGCTGA
AAATAGTAACCAGTCCCGGGGATCAGTCGAAGATAAAAGAAAGTATCGAGCTGGTATTGT
TGGCATTGAGAGAAAAATTGAAGAAAAGAGGAAAGAAACTGAAGAGAATATTTCTGTTGC
CTTTCAAGATTTAACAAAACTCATTGAAAAAGCAAAAGAAATGGTTAGCTTGTCTAAAGC
CATTGCATCTAAAATAAAGGATAAGCAAGGAGACATAACCGAAGATGAGACAATCAAATT
CAAATCATACTTACTTAGTCTTGGAATTCCAAATCCAGTAACCAAAGAGACGCATGGTTC
GGGAACTCATTATCACATGCAGCTAGCTACAGAAATTTGTACCGCTCTCGAATCAGTTAT
GCAATCTTCAGGAGGGATTGTTCTGATATCTGATGCCTATTGTCGCATTAACAGAGCCAG
AGGAATGGAACTACTTTCTCCTGAAGACATGATAAACGCTTGTAAGGCGATGGAAAATAT
GAAACTCCCTATGAAAATGAGAACTTATGATAGTGGTGTCACTGTTTTACAACTTCAGTC
ACACAGTGAAGAAAGTGCTGTTCAACAAACTGTTCAATTGGTTAAAGACAGTAATTGCTT
GACAGCTGAACAACTTTCTAATATTCTGGCAATATCAGTGTTGCTCGCAAAGGAGCGCCT
ACTACTCGCAGAAAAGAAAGGAAAGCTGTGCCGTGATGACTCGGTTGAAGGACTGGCTTT
TTATCCTAATTTGTTTCTTACAAATAACACTTGAAACCCTAGCAAATTTGTTTTTTACTA
TATACCCTGTACACTGCACTGCGTTTATTGGAATAAGCTGTCTAGATAGATCTCAGATAT
AATTACATTGTATATCAAGCCTACATGGTGTGGAAATATTTTTTTCTGCAAGAAAATTTA
AAATTAGGTCCAACGCTTATTTGAATTGGGCATATTTCCATTGATTTTTACATGCTTCTC
CTAAAAGGTTTCTTGGGTGTTTGGTTTTGCTGATCACATGGTGATTGAGAGTTGTTGTTT
TACCTACCAGTAGTTGTTTTGGCTATAGCTTTTCTGTCGCATGGTTAGATCTGTACAGTG
TACTGTGTTGAATTTAGTGAGGACAGTACACATAGTGATTTAACAACGGCATATACACGT
TTTTTTTTCAAATGGCGATAGTATGATTTGTTCTATACATTTAACATTATCTTCTGGAAG
ATGAGTGGTTGGTGCTCAACAAAATTTAAAACATGATTTACATCCTTGACTGTTGTAGAT
ACTGGACACAGAAAATATACCCATTTTCGAATCCATCCATCATAATATAAAAATACCTTG
CCATTACAGAACTGGCCTAAATAGTAATGCTAACAACAGATAAAAGATGCAGTTGTAGTG
TCATTGCACCTAACAGTCTTATATTTATCAAGGTCTTATTAATAATAGTTCCAAGGGCTT
TCAATATATCAGTTATAGAAATGAAAAGGTGTTATAAGAGTTCTAAATGCTTGGAAAATA
TGAGGTACCCAAAGCATGGTCTGACATTCCAAAACAACTATTAATAAGAAATACAGATTT
GGCTGTGATAAAGCTCTTCACATATAGGATTCCATTGTCATTTCAGTTGTAATGAAAGGA
TATTGTTATACCCGTCAGCATAACCCTAAAAGATGAAATTTAGTTTTGATTACTGGCATG
GTCGGCTTTAAACCAATTGTGCTATGCGCCTTAGGGGATGATCTACGCTAGGGTTATTTT
ATATTAAAATGTGCTTAGATCCATTTGGTTCATTAACTTACATGTACTTTTAAAGCACAC
ATTTTGATTACTTTCCATTCTACTAGAAAGATATAAAATCTATAATAATCTTTGATTCTT
GAGATCCTAGTTGAGAACACGAGGCCTCAAGGAAAATGTTACAATTGTGAAATTTTCATG
CTATGTGTTTGATCAATTTTCATTGTCGCATCATGCAAATATCTTAACAATAATTGTTTG
CTTTTCAGAA
| ProSiteProfiles |
GLUE_dom (IPR021648) - T[1-136] 19.593 |
| Gene3D |
PH-like_dom_sf (IPR011993) - T[1-136] 1.1E-42 |
| Pfam |
GLUE_dom (IPR021648) - T[11-86] 6.9E-14 |
| PANTHER |
Vps36 (IPR037855) - T[12-387] 9.5E-134 |
| SUPERFAMILY |
WH_DNA-bd_sf (IPR036390) - T[188-313] 2.61E-8 - T[279-386] 1.63E-27 |
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[239-318] 3.3E-31 - T[319-388] 3.6E-29 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| VPS36_HUMAN | 55.128 % | 451 | 6.1E-159 |