- Transcript 'Harore.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S52.g06335.01.t
Possible name(s)
PABPC1; PABPC3; PABPC4
Gene model
Location
S52 [0 / 1,903]
Amino acid sequence
Length: 551
>Harore.CG.MTP2014.S52.g06335.01.p
LAEIRHRYERQKQEQIQRYQGVNLYVKNLDDTISDDMLREAFAQFGTITSAKVMTDGERS
RGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLAAQYMQRVTNTMSG
MRVAPPSQMIGQSFQSGAPGYFMPIHNAQNRYVSGQLIRATPRWQPATAQPGFQMPGGLR
AAGPHGAGPAIRPMTAPVSRNGIQQPHRIDMIQQRQQPIYMQQAGRQGFKYTPNVRNPAA
MPVGVNQQAQVQQQVETPAQPAVHIQGQEPLTPSMLAAAPPHEQKQMLGERLYPLIESQH
SALASKITGMLLEIDNSELLHMLESRDSLKAKMDEAVAVLQAHQAKVAAANRQVTQSVSQ
ASQNQTMSGVSQINNAAPNPVADNGRWDDVQENDFDVSLSLHCFSMCFWFYFFVFGCIYL
RLDINGPLVIPVLDFNSLLIDVLPSGSCFCWFLFGVLFKWIKCDVVVFSAPCTLLPGRYI
YIKNIIQKSPMMYILRYSYGTLFFRDSSYTQSLVDGNEQYWPNCYISVDVVLMYFISAVE
LPFESQNIVFG
Nucleotide sequence
Length: 1,656
>Harore.CG.MTP2014.S52.g06335.01.t
CTGGCGGAAATCCGGCACCGTTACGAAAGGCAGAAACAAGAACAAATTCAGCGATACCAG
GGAGTAAATCTGTATGTGAAAAACCTTGACGATACGATCAGCGATGATATGCTTCGCGAA
GCCTTTGCTCAGTTCGGCACGATCACCAGTGCCAAAGTGATGACGGATGGTGAAAGATCA
CGTGGTTTTGGTTTTGTGTGTTTCAGCTCTCCAGAAGAAGCAACCAAGGCCGTTACTGAA
ATGAACGGCCGAATAGTTGGTACTAAGCCATTGTATGTCGCCCTCGCACAGAGAAAAGAA
GATCGCAAAGCACATCTTGCTGCACAGTACATGCAACGTGTTACAAATACTATGAGTGGA
ATGAGAGTGGCCCCTCCAAGTCAAATGATCGGGCAGTCATTCCAGTCTGGCGCTCCCGGA
TATTTCATGCCTATCCACAATGCCCAGAATAGGTATGTCTCTGGTCAGCTTATTCGTGCT
ACGCCTCGTTGGCAGCCTGCTACTGCTCAACCCGGTTTCCAAATGCCTGGTGGTTTAAGG
GCAGCTGGTCCACATGGTGCAGGACCTGCAATTCGTCCGATGACCGCCCCAGTATCGAGA
AACGGGATTCAGCAGCCGCATCGCATCGACATGATTCAGCAACGTCAACAGCCAATATAC
ATGCAACAGGCTGGAAGGCAGGGATTCAAGTACACACCTAACGTACGCAATCCTGCGGCC
ATGCCGGTTGGAGTCAATCAGCAGGCTCAGGTCCAACAACAGGTAGAAACTCCGGCTCAA
CCTGCCGTCCACATTCAAGGTCAAGAGCCGCTTACACCTAGTATGCTTGCTGCTGCTCCG
CCGCATGAGCAAAAACAGATGTTGGGAGAGAGATTGTACCCGCTCATCGAATCTCAGCAC
TCTGCTTTGGCTTCTAAGATCACAGGGATGTTGTTGGAGATCGATAACTCCGAACTCTTG
CACATGTTGGAATCCAGGGATTCGCTCAAAGCTAAAATGGATGAGGCTGTTGCAGTCCTT
CAAGCTCATCAAGCTAAGGTGGCAGCAGCAAACCGTCAGGTAACTCAGTCAGTATCCCAA
GCTTCTCAGAATCAAACGATGTCTGGCGTATCTCAAATCAACAACGCTGCACCAAACCCT
GTGGCAGACAATGGGAGATGGGATGATGTCCAGGAAAATGATTTTGATGTTAGTTTGTCC
TTGCATTGCTTTTCCATGTGTTTTTGGTTTTATTTCTTTGTGTTCGGTTGTATATACTTA
CGTCTTGACATAAATGGGCCCCTGGTGATACCAGTTTTAGATTTTAACTCGCTTTTGATC
GACGTTTTACCCTCGGGTTCATGCTTCTGTTGGTTTTTGTTTGGTGTTTTATTTAAGTGG
ATCAAGTGTGATGTTGTTGTATTTTCAGCCCCCTGCACATTGTTGCCAGGGAGATATATA
TATATAAAAAATATTATTCAGAAGTCTCCAATGATGTACATACTACGTTACAGCTATGGT
ACATTATTTTTCCGTGATTCAAGCTATACCCAGTCGTTAGTAGACGGCAACGAACAGTAT
TGGCCTAATTGTTACATCAGTGTTGATGTAGTTTTAATGTATTTCATCTCTGCTGTTGAA
CTGCCATTTGAATCGCAAAATATTGTATTTGGATAA
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[3-110] 2.8E-28 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[18-105] 2.82E-27 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[22-98] 19.024 |
| SMART |
RRM_dom (IPR000504) - T[23-94] 2.2E-26 |
| Pfam |
RRM_dom (IPR000504) - T[24-91] 1.9E-19 |
| SUPERFAMILY |
PABP-dom (IPR036053) - T[214-351] 6.8E-43 |
| ProSiteProfiles |
PABP_HYD (IPR002004) - T[268-345] 21.289 |
| Pfam |
PABP_HYD (IPR002004) - T[274-340] 2.1E-28 |
| SMART |
PABP_HYD (IPR002004) - T[280-343] 3.3E-36 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PABP1_HUMAN | 55.376 % | 345 | 1.44E-111 |
| PABP4_HUMAN | 54.211 % | 358 | 1.57E-116 |
| PABP3_HUMAN | 51.596 % | 311 | 1.75E-98 |