- Transcript 'Moocci.CG.ELv1_2.S63...' >
- Transcript 'KH2012:KH.C5.22.v2.A...' >
- Transcript 'Harore.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S52.g02697.01.t
Possible name(s)
DDX27; DDX47; DDX54
Gene model
Location
S52 [106,213 / 108,493]
Amino acid sequence
Length: 759
>Harore.CG.MTP2014.S52.g02697.01.p
MSDLIPTIKDGDNIQIFEEDSESEDETGQVFTKEMRKRKKAEEKGFNSNFVFDTDNQTEE
ISWSLDCALEMARAKQSNQSSLDHKIAEVRRNRLIKKAHFTPDCPDSNVVEEEASDEDEE
QSMLVADKVKTKEVKFKKNTKRKNDEEFDDEIRKTIAEKKAALISEKDDSDEEFFINCPE
WNPKLGFQDMNLSRPLLKGISVLNYVTPTPIQQAAIPVALLGKDICACAATGTGKTAAFM
LPVLERLVYKPRVAPVTRILCLVPTRELAVQVHSITRQLAQFTDIQVCLAAGGLDRKSQE
AALRHGPDIIVGTPGRVIDHLQNAPSFQIKTVEILILDEADRMLDEFFEDQMNEIIELCS
PNHQTMLFSATMTDQVKDLAAVSLNNPTKIFINSNTEVAPFLRQEFIRIRPNKEGDREAI
ICALCSRTFVSNVLIFTQTKKQAHRMHIVMGLLGLKVGELHGDLNQAQRLESLQKFKNGE
IDILVCTDIAARGLDISNVKTVINFTMPNTVKHYIHRVGRTARAGKVGRSVSLVGETERK
MLKDIVKQAKNPVKSRIVPPGVIEKFKSRLEEQDEEIEEVIKMEVSEKELIKSENQISKG
QKLLEKKTGKQCYEPQKRMWFQSHSDRENRKATLLLGFHSEVKGKKLKKGKKSTFVTRPR
NAEERAAHELEKVKAYQLRETKRNRKPKRARACAENNTERTSKRPKLKNKSSFESELTNT
GRHSVKKFRSGPNYQDRMAMGLGPKGKQRKSFKKPGGRR
Nucleotide sequence
Length: 2,280
>Harore.CG.MTP2014.S52.g02697.01.t
ATGTCAGATTTGATACCAACAATTAAGGATGGAGATAATATCCAAATATTTGAGGAAGAC
AGTGAAAGCGAAGATGAAACTGGTCAGGTATTCACGAAAGAGATGAGAAAACGTAAGAAA
GCTGAAGAAAAGGGATTCAATTCGAACTTTGTTTTTGATACTGATAATCAAACGGAGGAA
ATATCTTGGTCCCTCGATTGTGCACTTGAAATGGCGAGAGCTAAACAGAGTAATCAGTCA
TCTCTGGACCACAAAATCGCCGAAGTGCGCAGAAATCGATTGATAAAGAAAGCTCATTTC
ACTCCAGATTGTCCTGATAGTAATGTGGTGGAAGAAGAAGCCAGTGATGAAGATGAAGAA
CAGTCGATGTTGGTTGCGGACAAAGTGAAAACGAAAGAAGTTAAATTTAAAAAAAATACC
AAACGAAAAAATGACGAAGAATTCGATGACGAGATACGCAAGACCATTGCTGAAAAAAAA
GCAGCTTTGATTTCTGAGAAAGATGATAGTGATGAAGAATTTTTCATCAACTGCCCGGAA
TGGAATCCGAAATTGGGTTTTCAGGACATGAATTTATCCAGACCCCTTTTGAAAGGTATC
AGCGTGTTGAATTATGTCACCCCCACTCCCATACAACAGGCGGCTATCCCGGTTGCCTTA
TTGGGTAAAGACATATGCGCGTGTGCTGCGACAGGCACTGGAAAAACAGCTGCTTTTATG
TTACCGGTCCTCGAAAGACTTGTATACAAGCCACGAGTTGCCCCCGTGACAAGAATACTT
TGTCTGGTCCCCACTCGTGAACTGGCTGTGCAAGTGCATTCTATAACAAGACAGTTGGCT
CAATTCACAGATATTCAAGTTTGCTTAGCGGCCGGTGGTCTCGACAGGAAATCCCAGGAA
GCAGCCTTGCGGCACGGACCAGATATTATAGTGGGAACTCCCGGAAGAGTAATTGATCAT
TTACAGAATGCCCCTTCCTTTCAGATAAAGACGGTCGAAATTCTCATTCTGGATGAAGCG
GACAGAATGCTTGATGAATTTTTTGAGGACCAGATGAACGAAATAATTGAACTATGCTCT
CCGAACCATCAAACCATGCTATTTTCTGCTACTATGACAGACCAGGTTAAGGATTTGGCT
GCAGTTTCATTGAACAACCCCACTAAAATATTTATAAACAGCAATACAGAAGTTGCTCCG
TTTCTGCGTCAGGAATTTATTCGTATACGGCCCAATAAGGAGGGCGACAGGGAGGCGATC
ATATGTGCCCTGTGCTCTCGTACTTTTGTGTCGAACGTGCTAATTTTTACTCAGACCAAG
AAGCAGGCTCACCGAATGCACATTGTTATGGGATTGCTGGGGTTGAAGGTAGGGGAATTG
CACGGGGACTTGAATCAAGCTCAGAGGCTCGAAAGTTTGCAGAAATTCAAAAATGGTGAA
ATAGATATCCTGGTTTGCACTGACATAGCTGCTAGGGGTTTGGATATAAGCAATGTGAAA
ACCGTCATCAATTTTACTATGCCAAACACAGTCAAGCATTACATTCATCGCGTAGGGAGA
ACGGCCAGAGCGGGCAAGGTCGGTCGGTCTGTGTCGCTTGTAGGGGAGACCGAAAGAAAA
ATGCTCAAAGATATTGTCAAACAAGCGAAAAACCCTGTTAAGAGCAGAATCGTTCCTCCA
GGTGTCATAGAGAAATTTAAAAGTAGGCTTGAAGAACAAGATGAGGAGATTGAAGAAGTG
ATCAAAATGGAGGTCTCAGAGAAAGAGTTAATCAAATCGGAAAATCAGATTTCAAAGGGA
CAAAAACTGCTGGAGAAAAAAACTGGAAAGCAATGCTACGAACCGCAGAAAAGAATGTGG
TTTCAGTCGCACTCTGATCGAGAGAACAGGAAAGCCACCCTGCTTCTCGGCTTTCACTCG
GAGGTCAAAGGGAAGAAGCTGAAGAAGGGCAAAAAATCCACATTTGTGACACGTCCCAGA
AATGCTGAAGAGCGAGCTGCCCATGAATTGGAAAAGGTCAAAGCGTATCAACTGCGGGAA
ACCAAACGAAACAGGAAACCAAAGCGTGCTCGAGCTTGTGCTGAAAACAATACTGAGAGG
ACATCGAAAAGGCCGAAGCTGAAAAACAAATCTTCGTTTGAGTCTGAACTTACAAACACT
GGTAGGCATTCGGTGAAGAAATTCAGGTCTGGGCCAAATTATCAGGACCGTATGGCAATG
GGTTTGGGACCCAAAGGAAAACAGAGAAAATCTTTTAAGAAACCGGGTGGAAGAAGATGA
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[185-213] 10.905 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[204-405] 3.2E-56 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[209-379] 6.0E-47 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[216-390] 30.0 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[258-546] 4.29E-67 |
| ProSitePatterns |
RNA-helicase_DEAD-box_CS (IPR000629) - T[336-344] . |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[401-581] 20.786 |
| CDD |
Helicase_C (IPR001650) - T[406-533] 1.84205E-33 |
| Pfam |
Helicase_C (IPR001650) - T[419-525] 5.7E-30 |
| SMART |
Helicase_C (IPR001650) - T[444-525] 1.1E-31 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX27_HUMAN | 53.095 % | 714 | 0 |
| DDX47_HUMAN | 39.669 % | 261 | 3.59E-79 |
| DDX54_HUMAN | 39.118 % | 249 | 5.0E-71 |