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TRANSCRIPT CARD

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  1. Region 'REG00001465' > 
  2. Molecular Tool 'CCnb3 MO (Treen 2018)' > 
  3. Region 'REG00001443' > 
  4. Transcript 'Harore.CG.MTP2014.S5...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S52.g02092.01.t

Possible name(s)

FOXA2; FOXB1; FOXB2

Gene model

Harore.CG.MTP2014.S52.g02092

Location

S52 [324,554 / 326,294]

Sequences

Amino acid sequence

Length: 579

>Harore.CG.MTP2014.S52.g02092.01.p
MPRPGRDSYGDQKPPYSYIALTAMAIQSSPDKMMSLSEIYKYIMDRFPFYRKNTQRWQNS
LRHNLSFNDCFMKVPRRADRPGKGSLWTLHPTCGQMFENGSFLRRRKRFKVAGCDEEHDA
EFTRPFVSEDSPHQGIRRYDPAHVSPSAAEHAFLGMSKHHHAMIDTNKIAAMMQPNIMAA
AGPWIAQQSHSPNGVPFLPRPGFAMPPPHALAASAYFRSAIAEYQAALAGSILAKHRQQV
SPTQVHPISALTMLPAANASMMTLPHLSAIKSLAQASEARDAIVKHNLLNNRRLNMQHEV
QDLTIGKRREKEEDKKMKKSTVSFSIDNIMKGSFSKEADSTQKDTCHGSNNTPSSESTSP
RKNYATEKRSKKRSLSPDSTTSTPKRMNMEEDRRHSAFSGTNVMHGEQAFDFRDIWSQNK
PTNQINEIASISPDAKQVSSALENLYRYAARACNRMQLEKSYRENTTLPISHSSFSSTST
MEECSPKPFPSSPKEQPTSSSSEDDSPMSYRRINSDEKRKRTRGMDSSGKDNPMASTSDS
ESANSRETEHYYQTKSRSLPENSLFKAETTSPVSTMIAA

Nucleotide sequence

Length: 1,740

>Harore.CG.MTP2014.S52.g02092.01.t
ATGCCTCGTCCAGGAAGAGATTCTTACGGTGACCAGAAACCACCGTACTCTTACATCGCC
TTGACGGCAATGGCAATCCAATCATCTCCTGATAAAATGATGAGTTTGTCCGAGATCTAC
AAGTACATCATGGATAGGTTTCCGTTTTACAGAAAGAACACCCAACGTTGGCAAAATTCG
CTACGTCACAACCTATCATTCAACGATTGCTTCATGAAAGTACCCAGGCGAGCCGACCGA
CCAGGGAAAGGCAGTTTATGGACACTCCATCCGACCTGTGGACAAATGTTCGAAAATGGA
AGTTTCCTAAGAAGAAGAAAACGATTCAAGGTAGCTGGATGCGACGAAGAACACGATGCT
GAATTCACGAGGCCATTTGTTTCGGAAGATAGCCCTCACCAAGGTATTAGAAGATACGAT
CCAGCTCATGTGAGTCCCAGTGCAGCGGAACATGCTTTTTTAGGCATGTCAAAACATCAT
CACGCTATGATAGATACCAATAAAATAGCAGCTATGATGCAACCAAATATAATGGCTGCA
GCCGGACCATGGATAGCCCAACAGTCCCATTCTCCGAATGGCGTGCCGTTTCTACCGAGG
CCTGGATTTGCAATGCCACCTCCTCATGCTTTGGCTGCATCAGCCTACTTCCGATCGGCA
ATTGCCGAATACCAGGCCGCGCTTGCTGGGTCAATTTTGGCAAAGCATAGACAGCAGGTT
TCACCAACACAAGTTCATCCCATATCAGCTTTGACTATGTTACCAGCAGCAAATGCATCT
ATGATGACATTACCTCATCTATCGGCGATAAAATCCCTAGCGCAAGCATCCGAGGCTAGG
GACGCAATTGTAAAACACAACCTTTTAAATAATCGGAGACTGAACATGCAACATGAAGTT
CAAGATTTAACTATCGGGAAGAGACGGGAAAAGGAAGAAGATAAAAAAATGAAGAAAAGC
ACAGTGTCATTCTCCATTGATAATATAATGAAAGGGTCGTTTTCAAAGGAGGCAGATTCT
ACGCAAAAAGATACCTGTCATGGTTCTAATAATACACCCAGTTCCGAATCTACCTCACCG
AGGAAGAACTACGCGACTGAGAAAAGAAGTAAAAAGAGATCTCTATCTCCTGACTCCACA
ACTTCGACTCCGAAACGAATGAACATGGAAGAGGATCGTAGACATTCGGCTTTCTCAGGT
ACAAACGTTATGCATGGAGAACAAGCGTTTGATTTTCGAGATATTTGGAGTCAAAACAAA
CCGACTAACCAGATAAATGAAATTGCAAGCATTTCGCCCGATGCCAAGCAAGTTTCCAGC
GCTCTTGAAAATCTGTATCGTTACGCCGCACGCGCTTGTAACAGAATGCAACTGGAAAAG
AGCTACAGGGAAAACACTACGTTACCTATAAGTCACTCCTCTTTTTCAAGTACATCGACA
ATGGAAGAATGTTCTCCAAAACCGTTCCCGTCCTCTCCAAAAGAACAACCAACGTCTTCG
AGCAGCGAAGATGATTCTCCCATGTCTTACAGAAGGATAAACTCGGATGAGAAAAGAAAG
AGAACCAGGGGAATGGATAGTTCTGGAAAAGACAATCCAATGGCGTCGACTTCGGATAGT
GAAAGTGCTAACAGCCGAGAAACTGAACACTACTATCAGACGAAATCAAGATCACTGCCA
GAAAACAGCTTGTTCAAAGCAGAGACCACCTCGCCCGTGTCAACGATGATCGCAGCGTAA

InterProScan

SMART
Fork_head_dom (IPR001766) - T[11-101] 3.9E-60
Gene3D
WH-like_DNA-bd_sf (IPR036388) - T[11-112] 9.0E-45
SUPERFAMILY
WH_DNA-bd_sf (IPR036390) - T[12-107] 2.13E-39
PRINTS
Fork_head_dom (IPR001766) - T[13-26] 4.0E-22 - T[34-51] 4.0E-22 - T[57-74] 4.0E-22
ProSiteProfiles
Fork_head_dom (IPR001766) - T[13-107] 39.144
Pfam
Fork_head_dom (IPR001766) - T[13-97] 4.3E-36
CDD
Fork_head_dom (IPR001766) - T[13-90] 1.46389E-49
ProSitePatterns
TF_fork_head_CS_1 (IPR018122) - T[13-26] .
ProSitePatterns
TF_fork_head_CS_2 (IPR030456) - T[57-63] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
FOXA2_HUMAN 67.241 % 182 3.81E-51
FOXB1_HUMAN 81.739 % 223 5.06E-68
FOXB2_HUMAN 76.271 % 211 2.45E-62