- Transcript 'Harore.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S52.g00026.01.t
Possible name(s)
DDX27; DDX47; DDX54
Gene model
Location
S52 [99,348 / 108,684]
Amino acid sequence
Length: 759
>Harore.CG.MTP2014.S52.g00026.01.p
MSDLIPTIKDGDNIQIFEEDSESEDETGQVFTKEMRKRKKAEEKGFNSNFVFDTDNQTEE
ISWSLDCALEMARAKQSNQSSLDHKIAEVRRNRLIKKAHFTPDCPDSNVVEEEASDEDEE
QSMLVADKVKTKEVKFKKNTKRKNDEEFDDEIRKTIAEKKAALISEKDDSDEEFFINCPE
WNPKLGFQDMNLSRPLLKGISVLNYVTPTPIQQAAIPVALLGKDICACAATGTGKTAAFM
LPVLERLVYKPRVAPVTRILCLVPTRELAVQVHSITRQLAQFTDIQVCLAAGGLDRKSQE
AALRHGPDIIVGTPGRVIDHLQNAPSFQIKTVEILILDEADRMLDEFFEDQMNEIIELCS
PNHQTMLFSATMTDQVKDLAAVSLNNPTKIFINSNTEVAPFLRQEFIRIRPNKEGDREAI
ICALCSRTFVSNVLIFTQTKKQAHRMHIVMGLLGLKVGELHGDLNQAQRLESLQKFKNGE
IDILVCTDIAARGLDISNVKTVINFTMPNTVKHYIHRVGRTARAGKVGRSVSLVGETERK
MLKDIVKQAKNPVKSRIVPPGVIEKFKSRLEEQDEEIEEVIKMEVSEKELIKSENQISKG
QKLLEKKTGKQCYEPQKRMWFQSHSDRENRKATLLLGFHSEVKGKKLKKGKKSTFVTRPR
NAEERAAHELEKVKAYQLRETKRNRKPKRARACAENNTERTSKRPKLKNKSSFESELTNT
GRHSVKKFRSGPNYQDRMAMGLGPKGKQRKSFKKPGGRR
Nucleotide sequence
Length: 5,759
>Harore.CG.MTP2014.S52.g00026.01.t
AGATTCTGTACACATTCTCAATTCTACATATTGATATTGAAATAATGACGTAATCGATCG
CACATCAAAGCTTCCCTGTTGTTCCAGAACAATGGAGGCTAAGACAACGACCAAGAATCG
GAAATCTATGAGTCTAGCTCTCATTAAAACACACATTAACGTGTATGCATGTTTTAATCA
TAGCAAAAATAACGGCTCAGTCATATTACAGATCATCCCAGCTGCAGCAACATTCTCCAG
TCCAGAGGCCGCGGGATGGCTGTTCAAAATCATACACGAAGGCTGGTTGAGAAAGCGTTG
GAGGAAGCGCTATTGCGTGCTGTCAAATGGCATTTTGTACTTTTATGAATTCAAGACCTC
AGACGGCTCTGAGAAGACGTGCAGCACCATGAATTTATCACTTTTCCGAGAATGCGTGAA
GGCGCCGCAAAAAGACTGCAAAAAGAACCCAAATACGATAATTCTCGAACCAGCAAACGC
AAAAGATAAAAAGGCTTCGAGCGCTAAGCAGATGCAAAGGGAATACTTCTACACCGAAAC
CCCAGAAGAGCAAGAAAAGTGGGTTGCGAAACTCCAAGAAGCCTTATCGCTCTCATCTAT
TGGTGGAAACCAGAAATTACAGCATGTTACAAAGAATAGAGCTAAACCACCAGTCCGTGC
CAACGGAAACAGGAGACCTCCATCCAAACAGCACATCAGGGAAATGGCAATGATGGCTGA
AGTATCCCTTGATGAAGATCTGACCCAGACCAGCAAAGAGAACGGAGCTCCTAAGAAACG
AGGCCATAAGCCAGCAAGTGCTCTCAAACCTCCACCTGGTGGGGGCAATGCAAGGCTGTC
ACCGAAATCACCAAAGAAAGCATCCTCGAGTAATGAGTCTCCACAATCGACTGAAGACAA
TGAGACAGACGGAATGACTCCATCATCTTCCCCACTTCCCTTAACTCCGAAATCACCGAC
GCCCCCTCCCGCGGCTCTGAAGCCAAATTCGGTTAAGAAGAGTAACAGCAAAGGCATTCC
CAGCACTCTTAGTGAAGATAGCAATGTAAACTCGGTGTCTATGTCATCCTTAACAGAAGA
TGAAGATCCGAAAATGGAAGATACTCCCAAGTCACCGCCGGCGCCTCCTGCTGCATTGAA
ACCCAAGTCTACCAAACGTTCACCAGATTCCGATAATGTAGATAAGGATCTTCCCTTGCC
TCCACCAGCACCAGGTTCACCGGAAGATCCTAACTTTGTCATTAACAGCACTCCAGTGAT
CGCTGAGGAGGATCCAAAATCGCCTCCTCCACCTCCCGCAACACTCGAACCGTCCACAGA
AAAGAAATGTGAAAGTCCTATTATTACTGTCGAACGCACTCAAAGTGCTGATAGCATGGG
CAACCAGCCATCGCCACCAGCCACACCGGACGAAGAGCAAACTCGCTCTCTGTCGTCATC
TAGAGGATCTTCTTTAGGAAAGGGTGATGAGATCGCAGTGAAGCACGTATCTGTATCCGA
ATCACCACCAGGCACTTCACAATCGCAGAGCGAAAGTGACAAAGATGTTGCAACAACGCC
GCCGGACACGAACGAAGACGGAAAAAACGTTGATGAAATCAAAGGAATATCGACGGATGA
GAGAATGGTGAAAGCTAAATCAATGATGGAACTTGACAAAGATCTGCCTCCACCGCCTCC
AGATCCCCCAACAGAGGAACAAAATGGAGACGCATTGAAAGCTGATGTGAAGCCTAATAA
ACAGAAGAATAAAAAGGCGAAAAAGGAAAAGAAAGATAAAAAAGTTCGACCTTCGTCACT
CGTACTTGAGATTTAATGAACTGTTGGGCTCTGGCGAGCACTTTCTCCTACTTAGATCAG
AAATATAGTTACTAACCAGAGTTTCCCAATCGGTAATTAGGTTACGGATCGGCAAACGAT
TGCTTGTCTGTTTACATTTCTTTTCTTATTACTAAAAATCTTTTCATATATGAAGCTACC
GTAATTCGTTTGGTGAGTAATTTTAGAGAGTATTTTATCGGTGTCTGCAAAATGCATTTG
AATCGAGGCTGCTGTATCATTCTCAATTTCTGTAATGCGAGTAACGCACTTGGCGAATCA
GCGAGATCAAGTTTAAACGAGAAATTATCTCCTACTTGATAGGGCTCCGGTGATAAAGTA
ACCTGGGAGAATTACTGCGCAAGCGGTAAATACAGCTTTCGCGTTTTTATTATGTTATCG
TATGAGAATTCGTAAAACGGAATATACCAGGATTGAGCAACATCAACTCTTTTAGTAACA
TGTATGATGGTGCGATTGGAGGGTTCTAAAGTTGCGCAACCACGAATCTCCTAAAAAAGT
AATTGGACGTCGTCCTCAACCCACTGTCAAAGGTAATGCACGTAAACAGTGAGGAAGAAA
GAGTCTGAATCATACTGTCCACTAACTATAAGCGTGTATAACTTTCCTATCTGAACTCTT
GACTGTTGTTCACGTGGGCACATCGCTTATGCAGTTGTTATTTTCCGACTATAAGTTCCC
ACTCACTAATTTATTCAGTAGTGTGTCGTAACGATTCGTGATTCGTAACGTCACGTGTTG
ATGGAAGTTATAGGTTAACGCAGACTAAACATGCGCCGAGGGACGAAATATATATTTGTA
CTTGAACCAGGGGTCTGCAAACGGTTTGCATCATCGACCTCTTGGTCGATACTTATCATT
AAAAACTATTCGGAAAAGAAAAAATGAACTCTCTTTCCATATATATGAAGAGTCGATTTT
TTCTGTTCCAATTAGTTTGTATTTATCCCCAAGCAATTTCCTGATCCACATTCGACCCAT
GGGTTGATATCAATCACTATGACAGGCCCTGCTGTGAACTAGGCTGTACGGTAGAAAGTT
TTGTTTAATTTAATTTACTCTTCTTTAATCATGACCGCTGCTTTCGTTGTCACATATCAA
TAACCAAGTTTGTTACTGTTTCTTCGTAACTTATATCTCTAATAAAGAATTTACATTATG
TTTGTCTGTCTTTTGTAATGGTCACAAGAAAACCAAGTCTATCTTTGGAAAAATGATATA
AATAAAAATATTCCTAGTTTTCGGTTTATTGTTTGAGGAAGTAAACAAATGCTGTAAGGA
CATTGGCAAACTATGCTTGCTCGATCAAAACGATCCTAGACCTGCGACTAAGGGTACATA
AAAGGCATAAGATAAATGATATTGTGACGCCTCACAGCAGACATGAGAACTATACTGTAT
TCACTTGGATCCGGCAATTCGATATGACAATACCATAGCACTCAAATGAGGTATCATCTT
CTTCCACCCGGTTTCTTAAAAGATTTTCTCTGTTTTCCTTTGGGTCCCAAACCCATTGCC
ATACGGTCCTGATAATTTGGCCCAGACCTGAATTTCTTCACCGAATGCCTACCAGTGTTT
GTAAGTTCAGACTCAAACGAAGATTTGTTTTTCAGCTTCGGCCTTTTCGATGTCCTCTCA
GTATTGTTTTCAGCACAAGCTCGAGCACGCTTTGGTTTCCTGTTTCGTTTGGTTTCCCGC
AGTTGATACGCTTTGACCTTTTCCAATTCATGGGCAGCTCGCTCTTCAGCATTTCTGGGA
CGTGTCACAAATGTGGATTTTTTGCCCTTCTTCAGCTTCTTCCCTTTGACCTCCGAGTGA
AAGCCGAGAAGCAGGGTGGCTTTCCTGTTCTCTCGATCAGAGTGCGACTGAAACCACATT
CTTTTCTGCGGTTCGTAGCATTGCTTTCCAGTTTTTTTCTCCAGCAGTTTTTGTCCCTTT
GAAATCTGATTTTCCGATTTGATTAACTCTTTCTCTGAGACCTCCATTTTGATCACTTCT
TCAATCTCCTCATCTTGTTCTTCAAGCCTACTTTTAAATTTCTCTATGACACCTGGAGGA
ACGATTCTGCTCTTAACAGGGTTTTTCGCTTGTTTGACAATATCTTTGAGCATTTTTCTT
TCGGTCTCCCCTACAAGCGACACAGACCGACCGACCTTGCCCGCTCTGGCCGTTCTCCCT
ACGCGATGAATGTAATGCTTGACTGTGTTTGGCATAGTAAAATTGATGACGGTTTTCACA
TTGCTTATATCCAAACCCCTAGCAGCTATGTCAGTGCAAACCAGGATATCTATTTCACCA
TTTTTGAATTTCTGCAAACTTTCGAGCCTCTGAGCTTGATTCAAGTCCCCGTGCAATTCC
CCTACCTTCAACCCCAGCAATCCCATAACAATGTGCATTCGGTGAGCCTGCTTCTTGGTC
TGAGTAAAAATTAGCACGTTCGACACAAAAGTACGAGAGCACAGGGCACATATGATCGCC
TCCCTGTCGCCCTCCTTATTGGGCCGTATACGAATAAATTCCTGACGCAGAAACGGAGCA
ACTTCTGTATTGCTGTTTATAAATATTTTAGTGGGGTTGTTCAATGAAACTGCAGCCAAA
TCCTTAACCTGGTCTGTCATAGTAGCAGAAAATAGCATGGTTTGATGGTTCGGAGAGCAT
AGTTCAATTATTTCGTTCATCTGGTCCTCAAAAAATTCATCAAGCATTCTGTCCGCTTCA
TCCAGAATGAGAATTTCGACCGTCTTTATCTGAAAGGAAGGGGCATTCTGTAAATGATCA
ATTACTCTTCCGGGAGTTCCCACTATAATATCTGGTCCGTGCCGCAAGGCTGCTTCCTGG
GATTTCCTGTCGAGACCACCGGCCGCTAAGCAAACTTGAATATCTGTGAATTGAGCCAAC
TGTCTTGTTATAGAATGCACTTGCACAGCCAGTTCACGAGTGGGGACCAGACAAAGTATT
CTTGTCACGGGGGCAACTCGTGGCTTGTATACAAGTCTTTCGAGGACCGGTAACATAAAA
GCAGCTGTTTTTCCAGTGCCTGTCGCAGCACACGCGCATATGTCTTTACCCAATAAGGCA
ACCGGGATAGCCGCCTGTTGTATGGGAGTGGGGGTGACATAATTCAACACGCTGATACCT
TTCAAAAGGGGTCTGGATAAATTCATGTCCTGAAAACCCAATTTCGGATTCCATTCCGGG
CAGTTGATGAAAAATTCTTCATCACTATCATCTTTCTCAGAAATCAAAGCTGCTTTTTTT
TCAGCAATGGTCTTGCGTATCTCGTCATCGAATTCTTCGTCATTTTTTCGTTTGGTATTT
TTTTTAAATTTAACTTCTTTCGTTTTCACTTTGTCCGCAACCAACATCGACTGTTCTTCA
TCTTCATCACTGGCTTCTTCTTCCACCACATTACTATCAGGACAATCTGGAGTGAAATGA
GCTTTCTTTATCAATCGATTTCTGCGCACTTCGGCGATTTTGTGGTCCAGAGATGACTGA
TTACTCTGTTTAGCTCTCGCCATTTCAAGTGCACAATCGAGGGACCAAGATATTTCCTCC
GTTTGATTATCAGTATCAAAAACAAAGTTCGAATTGAATCCCTTTTCTTCAGCTTTCTTA
CGTTTTCTCATCTCTTTCGTGAATACCTGACCAGTTTCATCTTCGCTTTCACTGTCTTCC
TCAAATATTTGGATATTATCTCCATCCTTAATTGTTGGTATCAAATCTGACATTATTCTA
GGAAAGAACCATACAATGAACTCCACAAAGCGGAAAAACAAGTAATGGAGGGAGGTTAAG
TTAGGCAATCTCGACCAGTTTCATGAAATAGCGAGAGCTCAGACACGTGTTCGATTACAT
ATCCGCTAGAACTAATTTCTTAATATATATATGAATGTGTGTTACAACACCTGGACCAT
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[185-213] 10.905 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[204-405] 3.2E-56 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[209-379] 6.0E-47 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[216-390] 30.0 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[258-546] 4.29E-67 |
| ProSitePatterns |
RNA-helicase_DEAD-box_CS (IPR000629) - T[336-344] . |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[401-581] 20.786 |
| CDD |
Helicase_C (IPR001650) - T[406-533] 1.84205E-33 |
| Pfam |
Helicase_C (IPR001650) - T[419-525] 5.7E-30 |
| SMART |
Helicase_C (IPR001650) - T[444-525] 1.1E-31 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX27_HUMAN | 53.095 % | 714 | 0 |
| DDX47_HUMAN | 39.669 % | 261 | 3.59E-79 |
| DDX54_HUMAN | 39.118 % | 249 | 5.0E-71 |
