- Transcript 'Haaura.CG.MTP2014.S2...' >
- Molecular Tool 'cicl07d23-MO (Hamada's MO)' >
- Molecular Tool 'cicl035j13-MO (Hamada's MO)' >
- Molecular Tool 'Ci-MRF-MO1640 (Meedel 2007)' >
- Transcript 'Harore.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S527.g06886.01.t
Possible name(s)
DAW1; POC1B; SPAG16
Gene model
Location
S527 [22,764 / 25,625]
Amino acid sequence
Length: 617
>Harore.CG.MTP2014.S527.g06886.01.p
MANEIEEGPFYLEEVSIADDSDDDFLYEEVPVDDDSSFYSLENLDQTVYAIEEAKQNEKT
STKLETSHEVSVLQQPEVIEDFVRNFLMKMGLNRTLECFQTEWYELQQKGVLLEDEMGQV
PDAYQRNQYLTNEVKRLKGEVELFKNSAHKTKDDYTKLLKERDYHRMHHRRVVQEKNSLI
TDLKRLKRHYKSYEPTLLQLKSKYELAMKEKMLAKLERDRAVGQVTGLQATLRNLENGKD
MILPTLSGYRKERGSQMEGPSQRLLRQSREEAEMEKTMAPVSLVLETGKKEKEKFHPNDS
SFPADDGVNPYLSMPFTTPPHFNRPGGLKITTTVQAHELSISRVALHPRKQVAVTTSDDR
LWKMWSLPEGKIIMTGDGHTDWIADCDFNPEGSQLVTGSGDTSVKLWDFARACCILTLSE
HTHAVWGVTWHSCGDFIASCSMDGTSKIWDANSERCRSTLRGHTDSVNSIQFLHYSNILL
TCSADKTISLWDARTGLCPQTFYGHMHSINHSVFNLQGNTIASCDSYGMVKLWDTRQIAE
TCTFNVGPHPGNKLSFDPSGKILAVASNDGTVKMINVENNEVNFVSGHQDAVQTVVFDHL
GQFMLSGGSDGILQLWS
Nucleotide sequence
Length: 2,300
>Harore.CG.MTP2014.S527.g06886.01.t
CCAAAGCCTCACACCAACGCAGTCGCTTGAAAAAAATTAATACATTTTTTAATTTGAGTT
GTTTTTTTCCACAATTTTATCGCCTAAAATGCGAATTTGATATGGAAAAGTCATAAACTG
GATGAAAATGATGTAATTTATCTCTCAAATCCTTAATTTTCAGTAGAATTAGGTTATTTT
GACCGGTACAACCCGTGTATTTAGCGATGGCGAACGAAATCGAAGAAGGTCCCTTTTATT
TGGAGGAAGTTTCCATCGCTGACGATTCAGACGACGATTTTTTATACGAAGAAGTTCCGG
TGGATGACGATTCTAGTTTTTACTCGTTGGAAAACCTAGATCAAACGGTTTACGCTATTG
AAGAGGCAAAGCAGAATGAAAAAACTTCGACGAAGCTTGAAACGAGCCATGAAGTTTCTG
TTCTACAACAACCGGAGGTCATTGAAGATTTCGTTCGTAATTTCTTAATGAAAATGGGCC
TGAACAGAACCTTGGAGTGCTTTCAAACCGAATGGTACGAGCTACAGCAGAAGGGAGTTC
TTCTTGAGGATGAAATGGGACAGGTTCCTGACGCCTATCAGAGAAACCAGTACCTTACCA
ATGAGGTCAAAAGGTTGAAGGGCGAAGTTGAACTGTTCAAGAATTCAGCCCATAAAACGA
AGGACGACTACACCAAGCTTCTGAAGGAACGGGATTACCATCGAATGCATCACCGACGAG
TCGTTCAAGAGAAAAATTCTCTGATCACCGATCTCAAACGTCTGAAACGGCATTACAAGT
CATACGAACCCACGCTCCTGCAGCTGAAATCGAAATACGAGCTCGCAATGAAGGAAAAAA
TGCTGGCCAAACTCGAACGAGATCGCGCCGTCGGTCAAGTCACCGGTCTGCAAGCGACGC
TGAGAAATCTGGAGAATGGAAAAGACATGATTTTACCTACGCTCAGTGGGTACAGAAAGG
AGAGAGGCTCGCAAATGGAAGGTCCATCGCAACGCCTGCTCCGTCAATCGAGAGAAGAAG
CTGAAATGGAGAAAACGATGGCGCCAGTGAGTCTGGTTCTAGAAACAGGTAAAAAGGAGA
AAGAAAAGTTTCACCCGAACGACAGCAGCTTCCCTGCAGACGACGGGGTGAACCCGTACC
TGTCGATGCCTTTCACAACCCCTCCACACTTCAATAGACCCGGGGGTCTGAAAATCACGA
CAACGGTGCAGGCCCACGAGCTGTCGATCAGCCGGGTGGCGCTACATCCACGGAAACAGG
TTGCCGTGACGACTTCCGACGACCGTTTGTGGAAGATGTGGTCTCTGCCCGAGGGCAAAA
TAATTATGACAGGAGACGGGCACACCGACTGGATCGCAGACTGTGACTTCAACCCGGAAG
GGAGCCAGCTTGTTACTGGGAGTGGAGATACTAGCGTCAAGTTATGGGACTTTGCGAGAG
CCTGCTGTATATTAACCCTGAGCGAGCACACCCACGCAGTCTGGGGAGTAACCTGGCATT
CATGTGGTGATTTCATCGCGTCGTGTTCTATGGACGGCACATCGAAAATATGGGATGCAA
ACAGCGAGAGATGCAGGTCAACATTACGAGGTCACACAGACTCCGTCAACAGCATCCAGT
TTCTCCATTACTCCAACATATTGCTGACTTGTTCGGCAGATAAAACGATCTCGCTCTGGG
ACGCGAGGACAGGTTTATGTCCACAAACATTCTACGGCCACATGCATTCGATCAACCACT
CCGTTTTCAACCTCCAAGGAAACACGATCGCGTCTTGCGACAGTTACGGCATGGTCAAGC
TGTGGGACACGAGACAAATAGCGGAGACGTGCACCTTCAACGTGGGGCCCCACCCGGGAA
ATAAACTCAGTTTTGACCCATCCGGAAAGATTCTGGCCGTGGCAAGCAACGACGGGACTG
TAAAAATGATCAACGTCGAGAATAACGAAGTTAATTTCGTGTCGGGTCACCAGGATGCTG
TCCAGACCGTCGTCTTTGATCACTTGGGTCAATTTATGTTATCCGGAGGTTCCGACGGAA
TCCTGCAGCTCTGGTCTTGAATCAACTTTTAACATGTTGAGAAATAGACGATTTCCAAAG
ATTTTTAATGAAACTTGAATTATTTTTTGTTTTTTAACATTTTGTAAGAAATCTAAGTTA
AAAATATTTTTATCTTATCAGCTTATCTTATCTTTCATCAAATCTAGTAGACCCAATCAG
AATTGATGTCGATTCCAAGGTAAACTGATCAATCAAAGCTGTCTTTACCCTTGAAAATGA
AGTTGGTAAAGGAAGAAAGT
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[282-440] 6.4E-29 - T[441-617] 5.9E-49 |
| SMART |
WD40_repeat (IPR001680) - T[327-366] 0.026 - T[369-408] 8.8E-10 - T[411-450] 7.9E-9 - T[453-492] 1.3E-10 - T[495-534] 6.7E-4 - T[539-576] 0.012 - T[578-617] 6.5E-5 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[328-616] 4.12E-76 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[334-375] 10.709 - T[376-417] 14.218 - T[418-459] 13.148 - T[460-501] 14.619 - T[502-543] 8.804 - T[585-617] 14.519 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[334-617] 56.658 |
| Pfam |
WD40_repeat (IPR001680) - T[371-408] 4.1E-6 - T[414-450] 3.3E-6 - T[455-492] 1.9E-7 - T[498-534] 0.029 - T[584-617] 0.0081 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[395-409] 9.3E-7 - T[479-493] 9.3E-7 - T[604-617] 9.3E-7 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[395-409] . - T[437-451] . - T[479-493] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| POC1B_HUMAN | 31.095 % | 139 | 1.89E-35 |
| SPG16_HUMAN | 48.136 % | 600 | 0 |
| DAW1_HUMAN | 30.903 % | 148 | 4.44E-39 |