- Transcript 'Harore.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S511.g02756.01.t
Possible name(s)
SMG5; SMG6; SMG7
Gene model
Location
S511 [1,197 / 8,653]
Amino acid sequence
Length: 1,253
>Harore.CG.MTP2014.S511.g02756.01.p
MNDRVLPTVRLDEKTLWKLHEKLGKLKSKENCPTPNNEGNLTTQRTRSSRAPKYQVYQVG
VSRLSNRKLAPTFDQSTVEKTEDNIEEKADQKNKLDTPTQDGDRDRRPQENWTSNSRGGN
RRPRRTNYHRNENRRSKQGQQVKGQHWQNVAQRDKDSSDEVNEDDELAWDNYGESDLGTW
SPQVTAGASSLDGGHSDAELYKDLSEDEKKPAAISVKELHNSGRSRTNSEEDTPSAASSE
PNKEYYKVAHTASSQSEAEYEEEFEEDYNDEHEFSNEMRKSIDRHASPLTQDPSKKRLFD
PKNPNKPIVIKGLKGDRNEGCEYMAPTSGDNVYSPGLMREKLMKKIKGNRPRQTPRRPRS
PPRYYGNYYPEDDNDDLDRRWMDPHSPTGNYRRTSEDLSEDDDAIASQMQSIHRQSCVSM
LTEAERHEATLANILLTPSFDSQEYNESLTRVRNKLKVLYENIIVHDVETSSKHSIDQHL
WRNVFYQVIEILREQIRACPEQETSELKINLILLLDQGRAFYENLLERLQQKYRFNLKDI
LNNVASRKKLMSGGRRRTKLSLLSSQRIFICLGDIARYREQANDSSNYGRAKHYYLQAQI
LAPKNGRPYNQLAVLAVKTRNKLDAVYYYVRSLAASNPILTARESLMVLFDEIRRRLEYV
KRRKDEDSTAKDMANLKLAAKKDAGQKNKSDSPTRRWEEVWILPGSVQKEVVSASQPEQE
TSDFDELKLPPQDVAKHFVLLFLNAHGKLFTRIGLETFSEILTKTLRLFAATLEVPKIMT
SQRMLQLYAINLFSVYNAERLSVHGSVQDSTQNLHQALRLTFSVFAVTIEQINKFFEFNS
GDSDLFLSEHLCMLLPAVKIMFDWMYANKDFWYPPAKDLTEHGIDLWKNLAVLCNWICNH
ESTKHNTRIFSTADPELQEVFLPEDALLAGFSPLGQAFSDPRYVSSDKALTESETKSYVR
QCVRINLIKEFLEYLCGMEEPLLAFKQGVYVPVTTHSLNNWSDRLHQDDDFDPSDYDFED
YSNLAVGNSFSEQSSSIDHDKEELKELKKYRDSLQVTKNLQEKRHSEIQSSLDSDEKVKL
EICPKNLVPDTNCFIDHLNLIKRIIRSEKYKICMPLVVISELEGLATEMKGSSDHAKNVH
HNAKSAIDFIKVCFASNNSRFCALTKRGTELNSLQFRSEDSQLIGSNDDFILQSAQGHST
TLSSKTDHVIEGMRIVRRSVVLLTDDRNLRLKALLLQDVPTKGILQFCKWAKI
Nucleotide sequence
Length: 4,370
>Harore.CG.MTP2014.S511.g02756.01.t
AGATTCCTTAAACCATGAATGATCGAGTCTTACCAACTGTACGACTCGATGAAAAGACTT
TATGGAAACTTCACGAAAAGCTCGGTAAACTCAAATCAAAAGAAAACTGTCCGACGCCGA
ACAACGAAGGTAATTTAACAACGCAGAGAACGAGAAGTTCGAGGGCTCCGAAATATCAGG
TATATCAAGTCGGGGTGTCGAGGTTATCCAATCGTAAGTTAGCACCTACCTTCGATCAAT
CGACGGTTGAAAAAACAGAAGATAATATCGAAGAGAAAGCCGATCAGAAAAATAAGCTCG
ATACTCCGACTCAAGATGGCGATAGAGATCGTAGACCTCAAGAGAACTGGACATCGAATT
CTAGAGGCGGAAACAGGAGACCACGTCGTACAAACTACCATAGAAATGAGAACAGAAGGT
CAAAGCAAGGCCAGCAAGTCAAAGGTCAACATTGGCAAAATGTTGCGCAAAGAGACAAAG
ATTCCAGCGATGAAGTAAACGAAGATGATGAGCTAGCTTGGGATAATTATGGAGAATCAG
ATTTAGGTACCTGGAGCCCTCAGGTAACAGCTGGTGCATCCAGCCTTGATGGAGGACATT
CTGATGCTGAACTCTATAAAGATCTGAGCGAAGATGAAAAGAAACCTGCTGCCATATCTG
TTAAAGAGCTTCACAACAGCGGTCGAAGTCGGACCAATTCAGAAGAAGACACTCCTTCTG
CAGCGTCGAGTGAACCGAATAAGGAATATTATAAAGTTGCACATACAGCATCCTCACAAT
CTGAAGCAGAATATGAAGAGGAATTCGAAGAAGATTATAATGACGAACACGAATTTTCGA
ATGAAATGAGAAAGAGCATTGATCGCCATGCGTCACCCCTGACCCAAGACCCTTCTAAGA
AACGACTTTTCGACCCCAAAAATCCAAACAAACCGATAGTGATCAAGGGATTGAAGGGAG
ACAGGAACGAGGGTTGCGAGTACATGGCCCCTACGTCAGGTGACAACGTGTACAGCCCTG
GTTTGATGAGAGAAAAGCTAATGAAGAAAATTAAAGGCAATCGACCACGACAGACCCCGC
GAAGACCCCGCTCTCCCCCGCGTTACTACGGCAACTATTACCCCGAGGATGACAATGATG
ATTTGGACAGGAGATGGATGGACCCACACAGCCCTACTGGAAACTACAGACGAACATCTG
AAGATTTATCCGAAGATGATGATGCAATCGCGTCGCAGATGCAAAGCATTCATCGTCAGT
CATGCGTGTCCATGCTCACTGAAGCAGAACGTCACGAGGCAACCCTGGCTAACATTTTAT
TGACGCCGTCTTTCGACAGCCAGGAATACAACGAGAGTTTGACAAGGGTTCGAAATAAAC
TGAAAGTTTTGTACGAGAATATAATCGTTCATGATGTAGAGACTTCATCAAAGCATAGCA
TTGATCAACATCTTTGGAGAAATGTCTTCTATCAGGTTATTGAAATATTAAGAGAGCAAA
TTCGAGCTTGCCCAGAACAAGAAACATCCGAGCTCAAAATTAATCTAATTCTTCTCCTGG
ATCAAGGCCGAGCATTTTACGAAAACTTGCTCGAACGTTTGCAACAGAAATATCGATTTA
ATCTCAAAGATATTCTGAACAACGTTGCGAGTCGCAAGAAGCTGATGAGCGGCGGAAGAC
GAAGGACGAAACTTTCGTTGCTAAGCAGCCAAAGAATATTTATCTGTCTCGGAGATATCG
CAAGATACAGGGAGCAAGCAAACGATTCTTCTAATTATGGGAGAGCAAAGCATTACTATC
TGCAAGCTCAGATCTTAGCACCAAAGAACGGTCGTCCGTACAATCAACTTGCCGTCCTTG
CTGTTAAAACACGAAACAAACTAGACGCAGTTTACTATTATGTTCGTAGTCTTGCTGCAA
GCAATCCGATCCTGACTGCAAGAGAAAGCTTGATGGTCCTCTTCGATGAGATCCGGAGGA
GACTGGAGTACGTAAAGAGAAGAAAAGATGAAGATTCAACCGCAAAAGACATGGCTAACC
TAAAACTGGCTGCAAAGAAAGACGCGGGGCAGAAGAATAAATCCGATTCTCCAACACGTC
GATGGGAGGAAGTCTGGATTCTTCCCGGATCTGTGCAGAAGGAAGTTGTTTCCGCAAGTC
AACCGGAACAAGAAACCTCGGACTTCGATGAATTGAAACTACCGCCACAAGATGTCGCTA
AACATTTTGTTCTTCTTTTTCTCAACGCTCACGGGAAATTGTTCACGAGAATTGGTCTTG
AAACTTTTTCTGAAATCTTGACGAAGACTCTTCGACTCTTTGCTGCCACCCTGGAAGTTC
CTAAAATTATGACATCACAGAGAATGCTGCAGCTGTACGCAATAAATCTTTTTTCTGTGT
ATAATGCAGAGAGATTGTCGGTTCATGGAAGCGTCCAGGATTCAACACAGAATCTGCATC
AAGCTCTTCGTCTAACTTTCTCCGTATTTGCAGTAACAATAGAACAAATCAACAAGTTCT
TCGAATTCAATTCAGGAGATTCTGATTTGTTTCTGTCAGAGCATTTGTGCATGCTTCTAC
CAGCTGTTAAAATTATGTTCGATTGGATGTACGCCAATAAAGACTTTTGGTATCCTCCAG
CGAAGGATCTTACCGAACATGGAATTGATCTCTGGAAGAATCTCGCTGTGCTCTGCAACT
GGATTTGTAACCATGAATCAACGAAACACAACACCAGAATCTTTAGTACAGCTGATCCTG
AACTTCAGGAAGTTTTTCTACCAGAGGATGCATTGCTTGCTGGATTTTCACCACTAGGTC
AAGCATTCAGTGACCCGCGATACGTGAGCTCAGACAAAGCACTGACAGAATCTGAGACAA
AATCGTATGTCAGGCAATGTGTTAGAATCAATCTTATCAAAGAATTTCTGGAATATTTAT
GTGGGATGGAAGAACCTTTGCTGGCCTTCAAGCAAGGTGTATATGTTCCTGTTACAACGC
ACAGCTTGAACAACTGGTCGGACAGACTGCACCAAGATGATGATTTTGATCCGAGCGATT
ACGATTTCGAAGATTATTCGAACTTGGCTGTCGGAAATTCCTTCTCCGAGCAGAGTTCAT
CCATCGATCATGACAAGGAAGAATTGAAAGAGTTGAAGAAGTACAGAGACTCTTTGCAGG
TGACGAAGAACCTCCAGGAAAAGCGGCACAGCGAAATCCAGTCGTCTCTGGACAGCGACG
AAAAAGTGAAGCTTGAAATTTGTCCGAAAAACCTTGTCCCAGACACGAACTGTTTCATTG
ATCATTTGAACCTAATAAAAAGGATCATCAGGAGCGAGAAATATAAAATATGTATGCCAC
TAGTGGTCATCAGCGAGCTGGAAGGTCTCGCGACGGAAATGAAAGGGAGTTCAGACCATG
CTAAGAACGTACACCACAATGCGAAATCTGCGATCGATTTCATAAAAGTCTGTTTCGCGT
CGAACAATTCAAGGTTCTGCGCTCTCACAAAACGAGGAACGGAACTAAATTCGTTGCAGT
TTCGTAGCGAGGATAGTCAACTCATCGGCAGCAATGACGATTTTATTTTACAAAGCGCTC
AAGGTCATTCTACGACCTTGTCTTCGAAGACGGATCATGTCATTGAGGGTATGCGAATAG
TTCGTCGTTCTGTTGTTCTACTGACGGACGATCGTAACCTTCGTTTGAAAGCTTTACTAT
TACAAGACGTTCCTACTAAAGGAATATTACAGTTTTGCAAATGGGCGAAAATATGAAGGA
TACGAAGTAGGATCTGCTTGCCATTTGCAATATAGATTGCCTTGATGCCTCTCCAGTTTA
GGAACTTATCCGCTTTTTATATTCCGATAAAGCCAAGGCAAATCACAGAGGAAATCTTGC
ATTAAAACATAGATATTATGGAAATATGATAAATTATCTTCGATGACTAGGTCTAGTTGT
TATAAGTTTTATACACTGTTCCTTGGTGCATTCTCTACTTCATATATATATTTATATTAA
TATTTGTTACGATAGCATGAAGCTTCCAATGTCCACATACTGGTGTATATATGTCAATGC
AATTATTTCTTGTTTTCTATCTTTCTAACTGTTGTTTTCGCGACTCTAACCTTACTGTTG
ATTGACCTATCATAGGCTGGTTTATACAATCACAGGACTCTGGAGTCGAGAGTCAGAATT
TAGTGGGAGAGAAGGTTTGAGTGGGTTACTGGAGTAGTAATGGTATAGTTAATAAATTTG
TGAAGTTGGATACTTATTAATGCAAATCCAAATATTCACTAGTTCATACAAAATAATTCA
CAAGATTCATTCTTGGTCATATACATTATCGAAACACTTCTCTTGGCCTA
| Gene3D |
TPR-like_helical_dom_sf (IPR011990) - T[416-655] 3.6E-56 |
| SUPERFAMILY |
TPR-like_helical_dom_sf (IPR011990) - T[441-658] 7.68E-74 - T[728-994] 7.68E-74 |
| Pfam |
EST1 (IPR019458) - T[476-583] 3.6E-18 |
| Pfam |
DNA/RNA-bd_Est1-type (IPR018834) - T[591-937] 5.3E-56 |
| SUPERFAMILY |
PIN-like_dom_sf (IPR029060) - T[1084-1149] 2.35E-10 - T[1181-1248] 2.35E-10 |
| SMART |
PIN_dom (IPR002716) - T[1085-1231] 1.0E-9 |
| Pfam |
PIN_dom (IPR002716) - T[1087-1235] 4.3E-20 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SMG5_HUMAN | 26.147 % | 84 | 3.1E-16 |
| SMG7_HUMAN | 33 % | 105 | 1.07E-22 |
| EST1A_HUMAN | 36.544 % | 519 | 2.11E-161 |