- Transcript 'Harore.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S507.g00074.01.t
Possible name(s)
COL21A1; COL24A1; COL4A2
Gene model
Location
S507 [60,030 / 63,405]
Amino acid sequence
Length: 694
>Harore.CG.MTP2014.S507.g00074.01.p
RFLFISIALYNTMRIVIILLFIGLLGHNCSAQDYRADRRQPLPPPVKLDLRDTAIILPEI
EKVTPASRVISPIRIQTTENQQTVTQEECTSNCDGESSESSDCSSSSSECTGSVTCGHQS
SVTCGGGCCGCCGCCGGGGATSQILLQAINNMMQGPPGAQGPPGLYGPAGIPGLPGPPGR
GGLTGVQGPPGIQGPPGLPGKGIKGDCGPRGPSGNPGNPGVSIPGPKGEQGEPGPPGTFD
YEELKQFPRVAMRGDKGEQGIQGQKGDSMINTVTGPPGPPGPPGIGVKGEKGMTGESGPP
GAPGRIITDGTGEVTGLPGPKGEPGMEITGPQGPKGEIGEKGMTGVAGSPGEPGVEGPQG
PKGEPGVGLIGRSGEPGISIKGEPGVPGPPGLPGRSDSSEGDKLVDSGGLKSGETGPTGL
PGPPGLPGLMGPQGNTGNPGQKGEIGQMGPAGPQGRPGVRGSTGRAIRGPRGPTGSVGPK
GERGVGLPGSPGPPGPPGHTGYVGETSINVQSQQASGNCCNQQKVAFMAGLSCNFQGHYE
RIAFDTILTNIGSAYSEKSGCFIAPASGLYTFHVHILRCQNGGPLFMHLMRNKEMISSGT
NQDVRFETTSTSAVLQLRKGDVMWVRLRQGTVYGHTPSHYSTFSGYAVSLDEAVDSSAIS
WPRADAVSYSLRKPRSKYLTDPGSDGTESSIQKG
Nucleotide sequence
Length: 2,391
>Harore.CG.MTP2014.S507.g00074.01.t
AGATTTTTGTTTATTTCTATTGCACTATATAATACGATGCGTATCGTTATTATACTGCTG
TTTATCGGCCTTCTAGGCCACAACTGCTCTGCACAAGACTATAGAGCGGACAGGAGGCAA
CCGCTACCACCACCGGTTAAACTTGACCTCAGAGATACTGCGATCATTCTGCCCGAAATT
GAAAAAGTTACGCCCGCATCGAGAGTAATTTCACCCATTCGAATACAGACAACGGAGAAT
CAACAGACGGTTACGCAGGAAGAATGCACTTCTAACTGCGACGGAGAATCATCAGAATCG
TCGGACTGCTCTTCATCCTCGAGCGAATGTACGGGATCGGTTACTTGCGGACATCAAAGC
AGCGTCACGTGTGGTGGTGGTTGCTGTGGTTGCTGTGGGTGCTGTGGTGGTGGTGGCGCC
ACAAGTCAAATACTACTTCAGGCAATCAACAACATGATGCAAGGACCGCCTGGCGCGCAA
GGTCCTCCTGGTTTATATGGTCCTGCTGGCATTCCCGGCCTACCCGGACCCCCAGGAAGA
GGTGGACTTACTGGAGTACAAGGACCACCAGGCATCCAGGGACCGCCTGGGCTACCGGGC
AAAGGCATCAAAGGTGACTGCGGGCCCAGAGGACCCTCAGGGAATCCGGGAAATCCGGGA
GTCAGTATTCCAGGCCCAAAGGGTGAACAGGGAGAGCCGGGACCTCCGGGAACCTTCGAT
TATGAGGAACTGAAACAATTTCCAAGGGTTGCAATGAGGGGGGATAAAGGGGAACAAGGA
ATCCAAGGTCAAAAAGGAGACTCGATGATTAATACCGTGACAGGGCCACCAGGGCCACCA
GGGCCACCAGGAATCGGAGTCAAAGGCGAGAAGGGAATGACAGGGGAGTCCGGACCCCCA
GGAGCCCCTGGTCGAATCATAACAGATGGTACAGGCGAAGTCACAGGGTTGCCAGGACCC
AAGGGAGAGCCCGGAATGGAGATAACAGGGCCCCAAGGTCCTAAAGGTGAGATAGGTGAA
AAGGGCATGACTGGCGTTGCTGGTTCACCCGGAGAACCGGGAGTTGAAGGACCGCAAGGA
CCGAAGGGAGAGCCGGGAGTCGGTTTGATAGGCCGAAGTGGCGAACCAGGAATTTCGATA
AAAGGAGAACCTGGTGTGCCAGGACCTCCAGGTCTCCCAGGAAGATCCGATTCCTCGGAA
GGTGATAAATTAGTTGATTCAGGTGGCCTTAAAAGTGGAGAAACAGGACCAACGGGGCTT
CCCGGACCCCCCGGATTACCTGGGTTAATGGGACCGCAAGGCAATACTGGAAATCCGGGC
CAAAAGGGAGAGATTGGGCAAATGGGGCCAGCCGGTCCTCAGGGTCGACCAGGTGTTCGA
GGTAGTACAGGAAGAGCAATCAGGGGGCCCAGGGGGCCTACTGGATCAGTTGGACCAAAG
GGGGAACGAGGGGTCGGGTTACCAGGATCTCCAGGTCCCCCTGGCCCTCCGGGACATACG
GGATACGTCGGGGAAACGAGTATAAACGTACAATCCCAACAAGCAAGCGGAAACTGCTGC
AATCAGCAAAAAGTGGCATTTATGGCTGGGCTTTCGTGCAACTTTCAAGGACATTACGAA
CGGATTGCTTTCGATACGATTCTCACCAACATAGGGAGCGCTTACAGCGAAAAATCAGGA
TGCTTTATTGCTCCCGCGAGCGGCCTCTACACTTTTCACGTTCATATACTGCGTTGTCAA
AACGGAGGACCGCTGTTTATGCATCTCATGAGAAATAAAGAGATGATCAGTTCTGGAACG
AATCAGGACGTCAGATTCGAAACTACTAGTACAAGCGCAGTTTTACAGTTGCGAAAAGGT
GACGTGATGTGGGTCAGGTTACGACAAGGCACTGTATACGGTCATACGCCTTCGCATTAT
TCGACTTTTTCCGGTTACGCTGTCTCACTCGACGAAGCTGTGGATTCAAGCGCTATTTCG
TGGCCTAGGGCCGACGCTGTTAGCTATTCATTACGGAAACCGAGAAGTAAATACTTAACG
GACCCCGGAAGTGATGGAACGGAAAGCAGTATACAAAAAGGCTAAGTTTCAAAGTTCAAA
GGCCATATGTCAATGACTGAAAGAGAGAAAGCGAAGCTTTCAGACACAAAGACTGTAGTT
CGAAATACATACACAACACAACTCGTTCTAAGTGTAATGCGAAACGAACCGAATTAAATT
CTATCCGCCAAAGCTTGAGAAACCGCACTCACTTCACGAACAAGGACGAGCAAAGAAATA
TCGAAAATGTAAACGCGAATACTATTAATTTAACTACTATTTTTAATGGGAGGAATTTTT
GGTAAGAAGATAAAATGAATTATATATACAGAACACTACTTCCTCTATTTA
| Pfam |
Collagen (IPR008160) - T[413-465] 1.1E-8 |
| Gene3D |
Tumour_necrosis_fac-like_dom (IPR008983) - T[518-656] 1.2E-33 |
| SMART |
C1q_dom (IPR001073) - T[518-651] 8.6E-16 |
| ProSiteProfiles |
C1q_dom (IPR001073) - T[520-654] 24.165 |
| SUPERFAMILY |
Tumour_necrosis_fac-like_dom (IPR008983) - T[524-647] 3.51E-26 |
| Pfam |
C1q_dom (IPR001073) - T[526-646] 5.9E-23 |
| PRINTS |
C1q_dom (IPR001073) - T[535-561] 8.8E-11 - T[562-581] 8.8E-11 - T[607-628] 8.8E-11 - T[639-649] 8.8E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COLA1_HUMAN | 41.257 % | 126 | 7.56E-30 |
| COOA1_HUMAN | 39.952 % | 123 | 7.62E-29 |
| CO4A2_HUMAN | 38.539 % | 113 | 9.44E-26 |
