- Transcript 'KH2012:KH.C11.21.v7....' >
- Transcript 'Harore.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S49.g05942.02.t
Possible name(s)
EDC4
Gene model
Location
S49 [36,248 / 49,570]
Amino acid sequence
Length: 1,505
>Harore.CG.MTP2014.S49.g05942.02.p
MASVNVNGENSNSTELLTTTLKDMLKINGNNSSEDANGTEQTVILCPAVGDDSLDLQQKE
SLDEASLNDPAVTSGQIIDLSKAADGECIPITDKEVYIITNPSSNIESTASGSNKVRIRP
ITKFEWEHKYYPGSIVSVSNTHIAYSIKSRSYAVRIINRANTSDRLLLRGFTTPICDVAF
AHSSSSLISAIDEAGNFVIWQLSLNGDSTTSLKRLHVEATEDIGHSTSHRLVWLTHMHCD
IDNNIVEMISSEGDSADSIVPQKKLLGITHGNIAEVWDINAAFEAAENDPSATDSKETLK
NAFLTITGHDDIISDCELSPEGSVLAAASLDGFVKFWQINLENHQHPNCLHRWKPHGDRP
VSLVTFCDDRKQPNLVLYWRFMLTGCDHNTELKIWCTVTWSCLQTISFQPPAGIAQPLPA
LKCALHEASDYLLLSDVNRKVIYVMHCFTDLTEEKASLTSISQYLLTTPLLSFAILEARK
RKFRNPSVLDEDCEMDNDQEVKETDAVNEDDTDEDNLKSQSDQASKTCGVLIKLISVHTK
SLENLDIRFIPSALDDPMSSLSISTYNTMSDDQINTISVDDSLSIISPSVEEQSSDEIHA
HMDMEENEDADASNNKTGITALEGDQSTIHASNDNIEDNQMSPDVQVPTSPVPVFDDEER
RSQRQITSPDSLKAISNIMDLVVDVEGQPPVAQSSPSTMKQNSLHEISSAREEGEGEASA
ASPSKFDAHPVLLTPDAFTSSLRKSDHGVTGSAESSFTHITPFSVEHISLYASEKDKSLQ
ESVVIKSPILPTITQPPGLQTSTSSDALKTDVDLRPSVSPLIPPVSPSQPASYHSVLHSL
GQNEAGPFGDAQSMGFMTKDKSPDLISSASTLESVGGATTDGRVLIGGPLLGAVGGSGDA
LFTSSQSTALAPTEKEDDRGSNVSRRSEPIIASSSAPWPKAPDVTMSRPVPRSRTSPSNS
REEFLRSSIMPKSQLHSRANSDMQADVSTGEHARQIQLHNGGDLLEAIVNLQKQQEELLR
AHQKELSKKHTQVLKNVEVSLKKFDQQQSEKLDRALKGMSEMQRKFQAESRGNGAASADA
ISGKIDRAIRSEMKCNVIPTLSRSLDPLKDQLHNTLAQKLTATDSLLRESIPKLVKSKET
VELIGSSAGRAIQSHIYSAYKETFISTVIPAFEKSCNVMFQQLAGTFQRGMEEAVLKLEK
QIQFHLKGDLDRMQATEKEARDAISDIRDVTRQANESLTSAIEREVPRLVSAEMKSAQER
MLGEIAKTMQQQQKSALKEQKDVLEESLRSALADISSVPTQDKTKAVEKGRQLDASHRAT
PSARPTFEQVQQIILNLLHQGNLNAAFQRALTASDLNLVMYVCEMVDPAIVFGSTPCPLH
QPILLSLIQQLSCDLGHNTPTKLKYLQEAVMNLDRSHQVTQEHMHTVLESLVKNLVAHTN
VLSALPTDASNTGVIKQMKMLAMAAQSLVQLRYSVILIILTTISYIKVSLAKTLLLFLSL
WRRAR
Nucleotide sequence
Length: 4,785
>Harore.CG.MTP2014.S49.g05942.02.t
AGCGATAGTGAAATTATACATTTTTATTGTACGTATTTTCGACTGATGTTTGTCATTGAA
CGGCATGGCCTCGGTTAATGTTAATGGAGAAAATTCCAATTCGACAGAACTACTCACAAC
CACGCTGAAAGATATGTTGAAAATCAATGGGAACAACAGCTCTGAAGATGCCAATGGCAC
AGAACAAACTGTGATCCTGTGTCCTGCTGTGGGAGATGATTCTTTGGATCTACAACAAAA
GGAGTCGCTGGATGAAGCTTCTTTGAATGATCCTGCAGTAACAAGCGGACAGATCATAGA
CCTGAGCAAAGCCGCTGATGGTGAATGCATTCCAATTACCGATAAAGAAGTCTACATCAT
TACAAATCCCAGTTCTAACATAGAGAGCACAGCATCTGGAAGTAACAAGGTGAGAATCAG
ACCAATCACGAAATTCGAATGGGAACACAAGTATTATCCTGGAAGTATAGTCTCTGTGTC
CAACACACATATTGCCTATTCCATTAAAAGTCGCTCGTATGCTGTCCGAATCATAAATCG
GGCGAACACTTCGGATCGCCTGCTGCTTCGTGGATTTACCACTCCCATCTGTGACGTGGC
ATTTGCCCATTCGTCATCCTCGCTCATTTCAGCCATAGACGAAGCGGGAAATTTTGTTAT
TTGGCAATTGTCCCTCAATGGAGACAGTACAACATCTCTGAAGCGACTTCATGTCGAAGC
AACAGAGGATATTGGACACAGCACTAGCCATCGTCTTGTATGGCTGACCCACATGCACTG
TGACATTGACAACAACATTGTAGAAATGATTTCGTCTGAAGGCGACAGTGCTGATTCGAT
CGTACCTCAGAAAAAATTGCTTGGTATTACTCATGGGAACATTGCTGAAGTCTGGGACAT
AAATGCTGCATTTGAAGCGGCTGAAAATGATCCTAGTGCGACCGACAGTAAAGAAACGCT
CAAGAATGCCTTCCTCACAATAACGGGACATGATGATATTATTAGCGACTGTGAATTGTC
ACCAGAGGGCAGTGTTTTGGCAGCAGCGAGTCTCGACGGATTCGTCAAATTTTGGCAGAT
CAATTTAGAGAACCATCAACACCCAAATTGCTTGCATAGATGGAAACCACACGGAGACCG
TCCAGTTTCCCTTGTAACCTTTTGCGACGACAGAAAGCAGCCGAATTTAGTACTGTACTG
GCGATTCATGTTGACCGGCTGTGATCACAATACTGAATTAAAAATATGGTGTACAGTTAC
GTGGTCTTGCCTTCAGACTATATCCTTCCAACCTCCAGCCGGTATCGCGCAACCCTTGCC
TGCTTTGAAATGCGCCCTTCATGAGGCCTCCGACTATCTTCTGCTTTCTGATGTCAACAG
AAAAGTAATCTATGTGATGCACTGCTTCACTGATCTAACAGAGGAGAAAGCATCTTTGAC
TTCCATTTCTCAATATTTACTAACGACACCGCTTCTAAGTTTCGCCATTCTCGAGGCCCG
CAAGCGCAAATTTCGAAATCCTTCGGTTCTTGATGAAGATTGCGAGATGGACAATGATCA
AGAAGTTAAAGAAACAGATGCTGTAAATGAAGATGACACAGACGAGGACAATTTAAAAAG
TCAGTCTGATCAAGCATCTAAAACATGCGGTGTCTTAATCAAGCTCATATCCGTTCACAC
AAAGAGTCTTGAAAATCTTGACATACGATTTATTCCAAGTGCTTTGGATGACCCTATGTC
TTCTCTAAGCATAAGTACCTATAATACGATGTCTGACGATCAGATAAATACTATTAGTGT
TGACGACTCCTTGTCAATCATATCACCTTCTGTTGAAGAGCAGTCTTCAGATGAAATCCA
TGCCCACATGGATATGGAAGAGAACGAAGATGCAGATGCTAGCAATAATAAGACTGGCAT
CACAGCACTCGAAGGAGATCAGTCGACAATCCATGCCAGTAACGATAACATAGAGGACAA
CCAGATGAGTCCAGATGTACAAGTACCGACTTCCCCTGTGCCTGTCTTTGACGATGAAGA
AAGAAGATCGCAGAGACAAATAACATCTCCAGACTCGCTGAAAGCGATATCCAACATAAT
GGATTTGGTGGTAGATGTTGAAGGGCAGCCTCCAGTGGCGCAGTCCTCCCCCAGCACTAT
GAAACAAAACAGTCTGCACGAGATCTCATCTGCGAGAGAAGAGGGTGAAGGGGAAGCTTC
AGCCGCGTCACCCAGCAAATTCGATGCCCACCCGGTCTTGTTGACACCGGATGCATTCAC
ATCATCCTTGAGAAAATCTGATCACGGCGTCACAGGATCTGCAGAAAGCAGTTTCACTCA
TATTACTCCATTCAGTGTTGAACATATCTCACTCTATGCTTCAGAGAAAGATAAATCGTT
ACAAGAATCTGTTGTTATCAAATCACCCATCTTGCCAACCATTACACAGCCACCAGGCCT
ACAAACCAGTACTAGCAGTGATGCTTTGAAAACAGATGTTGATTTGAGGCCGTCTGTATC
ACCTCTCATTCCACCAGTTTCACCTAGTCAGCCAGCATCTTACCACTCCGTATTACACTC
CTTAGGGCAAAATGAAGCCGGTCCATTCGGCGATGCCCAAAGCATGGGCTTCATGACCAA
GGATAAATCACCAGATCTCATTTCCTCCGCTTCCACACTGGAAAGTGTGGGGGGAGCTAC
AACAGATGGCAGGGTACTCATTGGCGGGCCTCTGTTAGGAGCTGTCGGAGGTAGCGGAGA
TGCCCTTTTCACAAGCAGCCAATCGACCGCTCTTGCTCCCACAGAAAAAGAGGATGACCG
TGGAAGTAATGTCTCCCGTAGATCAGAGCCTATCATAGCTTCATCTTCTGCACCGTGGCC
AAAAGCTCCCGATGTAACTATGTCAAGACCGGTACCGCGTAGTCGTACATCCCCCTCAAA
CAGCCGCGAGGAATTTTTGAGGTCAAGCATCATGCCTAAGTCGCAATTACATTCTAGAGC
AAATTCCGACATGCAAGCTGATGTATCGACTGGAGAACATGCGAGGCAAATTCAGCTCCA
TAATGGTGGTGACTTACTGGAAGCCATTGTAAACCTGCAGAAACAACAGGAAGAATTGTT
GCGTGCCCATCAGAAGGAACTTAGCAAAAAACATACACAAGTACTGAAAAATGTTGAAGT
TTCGCTGAAAAAATTCGACCAACAGCAAAGTGAAAAACTTGACCGGGCGCTGAAAGGTAT
GTCTGAAATGCAACGCAAATTTCAAGCTGAGAGCAGAGGCAACGGAGCTGCGTCGGCAGA
TGCCATTTCGGGAAAAATAGACCGTGCTATAAGGAGCGAAATGAAGTGCAATGTTATTCC
AACGCTGAGTCGTTCACTGGATCCTCTCAAAGACCAATTACACAACACGCTCGCTCAGAA
ACTGACTGCGACTGATTCTCTGCTCAGGGAGAGTATTCCCAAACTCGTCAAGTCCAAGGA
AACAGTAGAATTGATCGGGTCGTCTGCCGGCCGTGCTATTCAAAGCCACATTTACAGTGC
CTACAAAGAAACTTTCATCAGCACAGTTATTCCTGCGTTTGAAAAATCCTGCAATGTTAT
GTTCCAGCAATTAGCTGGTACATTTCAGAGAGGGATGGAGGAAGCTGTGCTAAAACTAGA
AAAACAAATCCAGTTCCATCTCAAAGGCGACCTCGATCGTATGCAGGCAACAGAGAAGGA
GGCACGTGATGCTATTTCAGATATTCGGGATGTGACAAGGCAGGCAAATGAAAGTCTAAC
TTCAGCTATTGAAAGAGAAGTTCCTAGGCTTGTGTCCGCAGAAATGAAAAGCGCTCAAGA
ACGTATGTTGGGTGAAATCGCTAAGACTATGCAACAACAGCAGAAATCTGCTTTGAAAGA
GCAGAAAGATGTTTTGGAAGAAAGCTTGAGATCTGCACTAGCCGATATTTCATCGGTGCC
CACGCAGGACAAAACTAAAGCTGTGGAAAAAGGAAGGCAGCTGGATGCTTCACATAGAGC
TACTCCGTCAGCCAGGCCAACATTTGAGCAAGTGCAACAGATCATTTTGAATTTACTTCA
TCAAGGAAATTTGAATGCTGCCTTCCAGAGGGCTCTCACGGCTTCAGACCTCAATCTTGT
CATGTATGTTTGTGAAATGGTCGACCCAGCAATAGTATTTGGAAGCACACCGTGTCCCTT
ACATCAGCCGATTTTACTTTCTCTCATTCAACAATTGTCCTGCGACCTAGGACACAACAC
GCCAACCAAGCTCAAATATCTTCAGGAAGCTGTAATGAACCTGGATCGGTCTCATCAAGT
CACCCAGGAGCACATGCATACCGTTCTCGAATCATTAGTAAAAAATCTTGTAGCTCACAC
TAATGTACTATCTGCGCTGCCAACCGATGCTTCCAATACTGGTGTCATCAAACAAATGAA
AATGCTAGCGATGGCTGCACAGTCTTTGGTTCAGTTACGATACAGTGTGATTCTGATAAT
TCTAACAACCATCAGTTATATCAAAGTAAGCCTTGCTAAGACGCTTCTTTTATTTCTCTC
TTTGTGGAGGCGTGCAAGGTGAAGTTCTATTGATTTGAATACAATCTGTTAATAATCGTG
TTTTTTTTCTGTTTGTTAGCTTAGGGTTCTAGCTGTCTTATGTTCTGTTATTGGATATGG
TTTCATTGGAGATAATCACTAAAACTTTTTTTCATTCGTTTTATTAACACTGAATGATTG
TATTATGTAGCGCACAACTAAAATAAAATTTCTACATTCGTAAAA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[92-464] 8.8E-16 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[98-207] 2.85E-19 - T[302-447] 2.85E-19 |
| Pfam |
EDC4_WD40 (IPR032401) - T[112-447] 1.8E-87 |
| SMART |
WD40_repeat (IPR001680) - T[161-201] 34.0 - T[299-338] 2.7E-5 - T[346-396] 19.0 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[306-340] 12.514 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[306-347] 11.524 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| EDC4_HUMAN | 39.315 % | 347 | 2.62E-98 |