Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Transcript 'Cisavi.CG.ENS81.R1.5...' > 
  2. Transcript 'Boschl.CG.Botznik201...' > 
  3. Transcript 'Haaura.CG.MTP2014.S3...' > 
  4. Transcript 'Phfumi.CG.MTP2014.S2...' > 
  5. Transcript 'Harore.CG.MTP2014.S4...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S49.g05942.01.t

Possible name(s)

EDC4

Gene model

Harore.CG.MTP2014.S49.g05942

Location

S49 [36,246 / 49,569]

Sequences

Amino acid sequence

Length: 1,464

>Harore.CG.MTP2014.S49.g05942.01.p
MASVNVNGENSNSTELLTTTLKDMLKINGNNSSEDANGTEQTVILCPAVGDDSLDLQQKE
SLDEASLNDPAVTSGQIIDLSKAADGECIPITDKEVYIITNPSSNIESTASGSNKVRIRP
ITKFEWEHKYYPGSIVSVSNTHIAYSIKSRSYAVRIINRANTSDRLLLRGFTTPICDVAF
AHSSSSLISAIDEAGNFVIWQLSLNGDSTTSLKRLHVEATEDIGHSTSHRLVWLTHMHCD
IDNNIVEMISSEGDSADSIVPQKKLLGITHGNIAEVWDINAAFEAAENDPSATDSKETLK
NAFLTITGHDDIISDCELSPEGSVLAAASLDGFVKFWQINLENHQHPKWKPHGDRPVSLV
TFCDDRKQPNLVLYWRFMLTGCDHNTELKIWCTVTWSCLQTISFQPPAGIAQPLPALKCA
LHEASDYLLLSDVNRKVIYVMHCFTDLTEEKASLTSISQYLLTTPLLSFAILEARKRKFR
NPSVLDEDCEMDNDQEVKETDAVNEDDTDEDNLKSQSDQASKTCGVLIKLISVHTKSLEN
LDIRFIPSALDDPMSSLSISTYNTMSDDQINTISVDDSLSIISPSVEEQSSDEIHAHMDM
EENEDADASNNKTGITALEGDQSTIHASNDNIEDNQMSPDVQVPTSPVPVFDDEERRSQR
QITSPDSLKAISNIMDLVVDVEGQPPVAQSSPSTMKQNSLHEISSAREEGEGEASAASPS
KFDAHPVLLTPDAFTSSLRKSDHGVTGSAESSFTHITPFSVEHISLYASEKDKSLQESVV
IKSPILPTITQPPGLQTSTSSDALKTDVDLRPSVSPLIPPVSPSQPASYHSVLHSLGQNE
AGPFGDAQSMGFMTKDKSPDLISSASTLESVGGATTDGRVLIGGPLLGAVGGSGDALFTS
SQSTALAPTEKEDDRGSNVSRRSEPIIASSSAPWPKAPDVTMSRPVPRSRTSPSNSREEF
LRSSIMPKSQLHSRANSDMQADVSTGEHARQIQLHNGGDLLEAIVNLQKQQEELLRAHQK
ELSKKHTQVLKNVEVSLKKFDQQQSEKLDRALKGMSEMQRKFQAESRGNGAASADAISGK
IDRAIRSEMKCNVIPTLSRSLDPLKDQLHNTLAQKLTATDSLLRESIPKLVKSKETVELI
GSSAGRAIQSHIYSAYKETFISTVIPAFEKSCNVMFQQLAGTFQRGMEEAVLKLEKQIQF
HLKGDLDRMQATEKEARDAISDIRDVTRQANESLTSAIERELREHCIFYSAQERMLGEIA
KTMQQQQKSALKEQKDVLEESLRSALADISSVPTQDKTKAVEKGRQLDASHRATPSARPT
FEQVQQIILNLLHQGNLNAAFQRALTASDLNLVMYVCEMVDPAIVFGSTPCPLHQPILLS
LIQQLSCDLGHNTPTKLKYLQEAVMNLDRSHQVTQEHMHTVLESLVKNLVAHTNVLSALP
TDASNTGVIKQMKMLAMAAQSLVQ

Nucleotide sequence

Length: 4,829

>Harore.CG.MTP2014.S49.g05942.01.t
GCGATAGTGAAATTATACATTTTTATTGTACGTATTTTCGACTGATGTTTGTCATTGAAC
GGCATGGCCTCGGTTAATGTTAATGGAGAAAATTCCAATTCGACAGAACTACTCACAACC
ACGCTGAAAGATATGTTGAAAATCAATGGGAACAACAGCTCTGAAGATGCCAATGGCACA
GAACAAACTGTGATCCTGTGTCCTGCTGTGGGAGATGATTCTTTGGATCTACAACAAAAG
GAGTCGCTGGATGAAGCTTCTTTGAATGATCCTGCAGTAACAAGCGGACAGATCATAGAC
CTGAGCAAAGCCGCTGATGGTGAATGCATTCCAATTACCGATAAAGAAGTCTACATCATT
ACAAATCCCAGTTCTAACATAGAGAGCACAGCATCTGGAAGTAACAAGGTGAGAATCAGA
CCAATCACGAAATTCGAATGGGAACACAAGTATTATCCTGGAAGTATAGTCTCTGTGTCC
AACACACATATTGCCTATTCCATTAAAAGTCGCTCGTATGCTGTCCGAATCATAAATCGG
GCGAACACTTCGGATCGCCTGCTGCTTCGTGGATTTACCACTCCCATCTGTGACGTGGCA
TTTGCCCATTCGTCATCCTCGCTCATTTCAGCCATAGACGAAGCGGGAAATTTTGTTATT
TGGCAATTGTCCCTCAATGGAGACAGTACAACATCTCTGAAGCGACTTCATGTCGAAGCA
ACAGAGGATATTGGACACAGCACTAGCCATCGTCTTGTATGGCTGACCCACATGCACTGT
GACATTGACAACAACATTGTAGAAATGATTTCGTCTGAAGGCGACAGTGCTGATTCGATC
GTACCTCAGAAAAAATTGCTTGGTATTACTCATGGGAACATTGCTGAAGTCTGGGACATA
AATGCTGCATTTGAAGCGGCTGAAAATGATCCTAGTGCGACCGACAGTAAAGAAACGCTC
AAGAATGCCTTCCTCACAATAACGGGACATGATGATATTATTAGCGACTGTGAATTGTCA
CCAGAGGGCAGTGTTTTGGCAGCAGCGAGTCTCGACGGATTCGTCAAATTTTGGCAGATC
AATTTAGAGAACCATCAACACCCAAAATGGAAACCACACGGAGACCGTCCAGTTTCCCTT
GTAACCTTTTGCGACGACAGAAAGCAGCCGAATTTAGTACTGTACTGGCGATTCATGTTG
ACCGGCTGTGATCACAATACTGAATTAAAAATATGGTGTACAGTTACGTGGTCTTGCCTT
CAGACTATATCCTTCCAACCTCCAGCCGGTATCGCGCAACCCTTGCCTGCTTTGAAATGC
GCCCTTCATGAGGCCTCCGACTATCTTCTGCTTTCTGATGTCAACAGAAAAGTAATCTAT
GTGATGCACTGCTTCACTGATCTAACAGAGGAGAAAGCATCTTTGACTTCCATTTCTCAA
TATTTACTAACGACACCGCTTCTAAGTTTCGCCATTCTCGAGGCCCGCAAGCGCAAATTT
CGAAATCCTTCGGTTCTTGATGAAGATTGCGAGATGGACAATGATCAAGAAGTTAAAGAA
ACAGATGCTGTAAATGAAGATGACACAGACGAGGACAATTTAAAAAGTCAGTCTGATCAA
GCATCTAAAACATGCGGTGTCTTAATCAAGCTCATATCCGTTCACACAAAGAGTCTTGAA
AATCTTGACATACGATTTATTCCAAGTGCTTTGGATGACCCTATGTCTTCTCTAAGCATA
AGTACCTATAATACGATGTCTGACGATCAGATAAATACTATTAGTGTTGACGACTCCTTG
TCAATCATATCACCTTCTGTTGAAGAGCAGTCTTCAGATGAAATCCATGCCCACATGGAT
ATGGAAGAGAACGAAGATGCAGATGCTAGCAATAATAAGACTGGCATCACAGCACTCGAA
GGAGATCAGTCGACAATCCATGCCAGTAACGATAACATAGAGGACAACCAGATGAGTCCA
GATGTACAAGTACCGACTTCCCCTGTGCCTGTCTTTGACGATGAAGAAAGAAGATCGCAG
AGACAAATAACATCTCCAGACTCGCTGAAAGCGATATCCAACATAATGGATTTGGTGGTA
GATGTTGAAGGGCAGCCTCCAGTGGCGCAGTCCTCCCCCAGCACTATGAAACAAAACAGT
CTGCACGAGATCTCATCTGCGAGAGAAGAGGGTGAAGGGGAAGCTTCAGCCGCGTCACCC
AGCAAATTCGATGCCCACCCGGTCTTGTTGACACCGGATGCATTCACATCATCCTTGAGA
AAATCTGATCACGGCGTCACAGGATCTGCAGAAAGCAGTTTCACTCATATTACTCCATTC
AGTGTTGAACATATCTCACTCTATGCTTCAGAGAAAGATAAATCGTTACAAGAATCTGTT
GTTATCAAATCACCCATCTTGCCAACCATTACACAGCCACCAGGCCTACAAACCAGTACT
AGCAGTGATGCTTTGAAAACAGATGTTGATTTGAGGCCGTCTGTATCACCTCTCATTCCA
CCAGTTTCACCTAGTCAGCCAGCATCTTACCACTCCGTATTACACTCCTTAGGGCAAAAT
GAAGCCGGTCCATTCGGCGATGCCCAAAGCATGGGCTTCATGACCAAGGATAAATCACCA
GATCTCATTTCCTCCGCTTCCACACTGGAAAGTGTGGGGGGAGCTACAACAGATGGCAGG
GTACTCATTGGCGGGCCTCTGTTAGGAGCTGTCGGAGGTAGCGGAGATGCCCTTTTCACA
AGCAGCCAATCGACCGCTCTTGCTCCCACAGAAAAAGAGGATGACCGTGGAAGTAATGTC
TCCCGTAGATCAGAGCCTATCATAGCTTCATCTTCTGCACCGTGGCCAAAAGCTCCCGAT
GTAACTATGTCAAGACCGGTACCGCGTAGTCGTACATCCCCCTCAAACAGCCGCGAGGAA
TTTTTGAGGTCAAGCATCATGCCTAAGTCGCAATTACATTCTAGAGCAAATTCCGACATG
CAAGCTGATGTATCGACTGGAGAACATGCGAGGCAAATTCAGCTCCATAATGGTGGTGAC
TTACTGGAAGCCATTGTAAACCTGCAGAAACAACAGGAAGAATTGTTGCGTGCCCATCAG
AAGGAACTTAGCAAAAAACATACACAAGTACTGAAAAATGTTGAAGTTTCGCTGAAAAAA
TTCGACCAACAGCAAAGTGAAAAACTTGACCGGGCGCTGAAAGGTATGTCTGAAATGCAA
CGCAAATTTCAAGCTGAGAGCAGAGGCAACGGAGCTGCGTCGGCAGATGCCATTTCGGGA
AAAATAGACCGTGCTATAAGGAGCGAAATGAAGTGCAATGTTATTCCAACGCTGAGTCGT
TCACTGGATCCTCTCAAAGACCAATTACACAACACGCTCGCTCAGAAACTGACTGCGACT
GATTCTCTGCTCAGGGAGAGTATTCCCAAACTCGTCAAGTCCAAGGAAACAGTAGAATTG
ATCGGGTCGTCTGCCGGCCGTGCTATTCAAAGCCACATTTACAGTGCCTACAAAGAAACT
TTCATCAGCACAGTTATTCCTGCGTTTGAAAAATCCTGCAATGTTATGTTCCAGCAATTA
GCTGGTACATTTCAGAGAGGGATGGAGGAAGCTGTGCTAAAACTAGAAAAACAAATCCAG
TTCCATCTCAAAGGCGACCTCGATCGTATGCAGGCAACAGAGAAGGAGGCACGTGATGCT
ATTTCAGATATTCGGGATGTGACAAGGCAGGCAAATGAAAGTCTAACTTCAGCTATTGAA
AGAGAACTTAGAGAACATTGCATATTTTACAGCGCTCAAGAACGTATGTTGGGTGAAATC
GCTAAGACTATGCAACAACAGCAGAAATCTGCTTTGAAAGAGCAGAAAGATGTTTTGGAA
GAAAGCTTGAGATCTGCACTAGCCGATATTTCATCGGTGCCCACGCAGGACAAAACTAAA
GCTGTGGAAAAAGGAAGGCAGCTGGATGCTTCACATAGAGCTACTCCGTCAGCCAGGCCA
ACATTTGAGCAAGTGCAACAGATCATTTTGAATTTACTTCATCAAGGAAATTTGAATGCT
GCCTTCCAGAGGGCTCTCACGGCTTCAGACCTCAATCTTGTCATGTATGTTTGTGAAATG
GTCGACCCAGCAATAGTATTTGGAAGCACACCGTGTCCCTTACATCAGCCGATTTTACTT
TCTCTCATTCAACAATTGTCCTGCGACCTAGGACACAACACGCCAACCAAGCTCAAATAT
CTTCAGGAAGCTGTAATGAACCTGGATCGGTCTCATCAAGTCACCCAGGAGCACATGCAT
ACCGTTCTCGAATCATTAGTAAAAAATCTTGTAGCTCACACTAATGTACTATCTGCGCTG
CCAACCGATGCTTCCAATACTGGTGTCATCAAACAAATGAAAATGCTAGCGATGGCTGCA
CAGTCTTTGGTTCAGTGATTTTTACTTGAACACAGATAAATGCTGTGAGTATACAAAATT
TCAATTGCTAACCAGGTTACGATACAGTGTGATTCTGATAATTCTAACAACCATCAGTTA
TATCAAAGTAAGCCTTGCTAAGACGCTTCTTTTATTTCTCTCTTTGTGGAGGCGTGCAAG
GTGAAGTTCTATTGATTTGAATACAATCTGTTAATAATCGTGTTTTTTTTCTGTTTGTTA
GCTTAGGGTTCTAGCTGTCTTATGTTCTGTTATTGGATATGGTTTCATTGGAGATAATCA
CTAAAACTTTTTTTCATTCGTTTTATTAACACTGAATGATTGTATTATGTAGCGCACAAC
TAAAATAAAATTTCTACATTCGTAAAACA

InterProScan

SUPERFAMILY
WD40_repeat_dom_sf (IPR036322) - T[98-207] 2.88E-18 - T[302-443] 2.88E-18
Pfam
EDC4_WD40 (IPR032401) - T[112-443] 3.8E-81
Gene3D
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[119-461] 8.0E-15
SMART
WD40_repeat (IPR001680) - T[161-201] 34.0 - T[299-338] 2.7E-5 - T[342-392] 420.0
ProSiteProfiles
WD40_repeat (IPR001680) - T[306-340] 12.514
ProSiteProfiles
WD40_repeat_dom (IPR017986) - T[306-347] 11.524

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
EDC4_HUMAN 38.71 % 333 4.34E-94