- Clone 'cicl059m23' >
- Transcript 'Phmamm.CG.MTP2014.S5...' >
- Transcript 'KH2012:KH.C7.125.v1....' >
- Transcript 'Harore.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S47.g14092.02.t
Possible name(s)
NCOA7; OXR1; TLDC2
Gene model
Location
S47 [330,160 / 341,220]
Amino acid sequence
Length: 697
>Harore.CG.MTP2014.S47.g14092.02.p
MWIGNPTFRQIGNISYTSYTPFTVRSKNLIFGVGMLAPESKQSSSLLRNHCQEIEEASHH
LATMEYEATARDTLQSIAVAFDTTTSRLMKLNRMTSSTSIFPGQKLHVPNCETAQSPHYD
TDESTSPKSERTFSGEFSFLAPLAPSTSTLRPFQDLVMVMPKPTETSDKDPVDESIFNET
NDGKSRNESQSDDRERFVSSESTESEPFEEGFLKISVHYITDQKDTVEGVILITPTALLF
DPSTDDPIVMKEGCDKFGIMCPMHLICSVAMYNDTSQMSEKCDTSLTEGFTDANDNRAKH
NKLESFKQMTNSMSDEYLDSSEEQVSENKIEPSTNNEIDSDENSMYKSTLCTALGNENMG
PIPGTAKPAPRTGSETQIHQNALSSLNSNSMFLCIRARRRMVRTFSQGEDSLEDETNSSD
MRLPEYWFLVPRKRSDSIYAFFLQWSPENNLNHTGESLGFVMVSNNSLSDEHGERTRSHT
NSSIEFVDDFFDESFSFEKEWQIISFNEARKTFSALELANADSSLIPELEKSSNYLTDET
LLLLCKNLPNRCIGYSWFPVYTTNDHGTSLRTLYRNMAKLEGPVVLIIQDSNDHIFGAHC
SNPFHVSDHYYGSGESFLFQLSPEFEVYKWTGENSFFIKGDFDSLTIGGGKGSFGLWLDA
DLYRGCSHECETYNNKILSSSEDFFIQGLEIWSFKDM
Nucleotide sequence
Length: 3,539
>Harore.CG.MTP2014.S47.g14092.02.t
ATGTGGATTGGGAACCCAACCTTCAGACAAATTGGGAATATTAGTTATACTTCATACACA
CCATTTACTGTACGATCAAAAAACTTGATTTTCGGTGTAGGCATGCTGGCACCAGAATCG
AAGCAGTCAAGTTCGCTGCTCCGTAATCACTGCCAAGAAATCGAAGAAGCTTCACATCAT
TTAGCCACAATGGAATATGAAGCAACCGCGAGAGACACTCTTCAAAGCATAGCTGTCGCT
TTTGACACCACGACTTCCAGGCTAATGAAATTGAATCGAATGACGTCCTCGACTTCCATA
TTCCCTGGACAAAAATTACATGTTCCTAACTGCGAAACTGCTCAGTCGCCGCATTATGAT
ACGGACGAGTCTACATCACCAAAATCTGAAAGGACTTTTTCTGGCGAATTTTCATTCTTG
GCACCGCTTGCACCTTCGACAAGCACGCTCAGACCTTTCCAAGACTTGGTCATGGTGATG
CCAAAACCCACAGAAACATCTGACAAAGATCCGGTTGATGAATCAATTTTCAACGAAACG
AATGATGGAAAATCAAGAAATGAATCGCAAAGTGATGATAGAGAACGATTCGTGTCGAGT
GAATCCACGGAATCGGAACCTTTCGAAGAGGGTTTTCTCAAAATAAGTGTACATTACATC
ACAGATCAAAAGGACACTGTCGAGGGAGTTATACTTATTACGCCAACGGCCTTGCTGTTC
GACCCCAGCACAGACGACCCGATCGTGATGAAGGAAGGATGCGACAAATTCGGAATCATG
TGTCCAATGCATTTGATCTGCAGCGTCGCTATGTATAATGATACGAGTCAAATGTCTGAA
AAGTGTGACACGTCCCTGACGGAAGGCTTCACGGACGCCAATGACAATCGGGCGAAACAC
AATAAACTAGAATCTTTTAAACAAATGACTAATTCCATGTCGGACGAGTATCTCGACTCC
TCTGAAGAACAGGTCTCGGAAAACAAAATCGAGCCTTCGACTAATAACGAAATAGACTCA
GACGAAAACTCCATGTACAAGAGCACGCTTTGTACGGCTCTTGGAAATGAAAATATGGGG
CCAATTCCAGGAACCGCAAAACCAGCACCAAGAACTGGATCAGAAACACAAATACATCAA
AATGCACTATCATCACTAAACAGTAACAGCATGTTCCTCTGCATTCGAGCACGCAGGCGC
ATGGTAAGAACATTTTCTCAAGGAGAGGACTCCCTTGAAGATGAAACAAACTCTTCAGAT
ATGAGACTTCCAGAATATTGGTTCTTGGTTCCAAGAAAAAGATCAGACAGCATTTATGCC
TTTTTTCTGCAATGGTCTCCTGAAAATAATCTCAACCACACAGGAGAATCACTCGGTTTT
GTTATGGTTTCCAATAATTCGCTCTCAGATGAGCATGGGGAGCGGACAAGATCTCACACC
AATTCTTCAATAGAGTTTGTGGATGATTTCTTTGACGAGAGTTTCTCATTTGAGAAGGAA
TGGCAGATTATCAGCTTCAATGAAGCGAGAAAGACTTTTTCCGCTCTTGAACTAGCCAAT
GCGGACAGTTCTCTCATTCCTGAATTGGAAAAGTCAAGCAATTATCTCACAGATGAAACA
TTATTATTGCTTTGTAAAAATCTTCCGAACCGATGTATTGGTTATTCGTGGTTCCCGGTA
TACACCACCAATGACCACGGCACAAGCTTACGTACGCTGTATCGTAATATGGCTAAGCTG
GAAGGACCAGTTGTACTGATAATTCAAGACTCTAATGATCATATTTTTGGTGCGCATTGT
TCTAATCCTTTTCATGTGAGTGACCATTATTATGGCTCCGGGGAATCATTTTTATTCCAA
TTGAGTCCGGAGTTCGAAGTGTACAAATGGACGGGAGAAAACAGTTTTTTCATCAAGGGA
GACTTTGACTCGTTAACAATTGGTGGAGGAAAGGGGAGTTTCGGACTCTGGTTGGACGCA
GATCTGTACCGGGGGTGCAGCCACGAATGTGAAACATACAACAATAAAATTTTGTCAAGC
TCGGAAGATTTTTTTATACAAGGTTTGGAAATTTGGTCTTTCAAAGATATGTGAAATATG
TTGCATCAATTTTCCTAATGTTTTTCAACCATTATCGCATCTCATTATGGGGCTACTTGT
TCATTTCCCGGTTTCAATTTTAGATTGGTTATGAAACTACTGTACCTCAGTATTCACTAC
GACAGAAATATCATCCTGCAAAATAACACAGTGTAATATATCACAGCGATATTTGTTATA
TAACTGTGTAAATCATTATTCCCTTTTTGTGGTTTCATTCTTACAATTCCTTAAATCAAA
GGAATCATCTTTTGTTAAAGGTTTTCGTGCAATTGGAAAATATTTGTAGTTTTAATGTTT
CCTTAGCAGAGTACAAGTGATTTGATATAGAAATTTGTAGATCCTGTCCGAGTGTAGATA
CACTGTGTTGTTGGGTTTGTTGTTCTAGTTAAGTATTATGGTGCCATTGGCTGGATGATT
CAGGCTCAAAAAAGGTATGTGTACAAAAATGTGGAGAAATGTTTTATAAGTGAAATCTCG
TAGTTATAATGTTGACTGCTTGCGTAGCATTGAAACTTCTCAGATCCCCATACTACTAAT
CTGTGTGCTAAAGTTCAATATTTCTTATCCTTAAAAGTATGTTGCTCTTTTGAAATCCAA
ATCCGGGTTTTTATTCAATCGAAACCTGTTCATGCGCTGCAGTCCTCTCTCCTGTCTCTC
TGCCAATATGCACAATGAGCAGCGTAATAGAATAGCAGCATTTTTATTACTTGTAACTGA
CAATATGTAGAAAAATAACTAGCCTGTAACTGCAATACTTCTGAATGTTTCATTGTATGC
ATTGTTTTGAACAAATAATGTATTTGTCAATGCATTTTGTAATTCTGTATGCTTATTATT
GTGTATGCAGTTGTAGTCTGTCTTTTGTTAATTTTTTTATGATTCGATGATACGTGTGCT
CATCAAAGCGAAAAGTATAATCAAAATTGAATGTTTAAAACAGCGCCAAAAATTCTTTTT
CTTGTTGCTGACCAGTCAGAAAATCTGCTGGCTTTGTGTATGATATGACCATAATCATAG
GAGTTGATCCGAGTACATCTCAGTTTGTCTGTTTTATTTCTACGATACCTTTTTTTCATA
GCAATCATTAATAATTCAAGAAGCAGTAACTCATCAACGGTTAGTGTTTTGTAGTGTCGC
ATGTACCAATGATAGCTACTCTCAAGCCACTCCAGCCTTGCAAAACAATAACTTCCAACT
GTAGTAGGTGTTATTTCTAGTAGATAGTCTTTTCGTCACACCACCAATGATGGCGAAGGG
AAAAGATAGTAAGGTTAAACAAGCCCAGGCCCCTTTTTATGATGCGAGGCTTTCTGTCCA
TTTACTTCTGTACTGTATCTTCTGTGACTTTCATCAACCTCCTATGTTTACACATTTCAA
GGCTTGTCTATATTTTGTTCTAATTTTTAAAATATATTTCGGTTGTGCTGCATTGTAAA
| Gene3D |
LysM_dom_sf (IPR036779) - T[54-120] 3.0E-11 |
| ProSiteProfiles |
LysM_dom (IPR018392) - T[64-108] 12.692 |
| SMART |
LysM_dom (IPR018392) - T[65-109] 9.6E-9 |
| CDD |
LysM_dom (IPR018392) - T[66-108] 1.89712E-8 |
| Pfam |
LysM_dom (IPR018392) - T[71-109] 1.3E-10 |
| SMART |
TLDc_dom (IPR006571) - T[533-695] 8.9E-59 |
| Pfam |
TLDc_dom (IPR006571) - T[560-694] 2.3E-38 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| OXR1_HUMAN | 41.791 % | 253 | 4.24E-73 |
| NCOA7_HUMAN | 43.934 % | 247 | 1.56E-70 |
| TLDC2_HUMAN | 47.305 % | 176 | 4.86E-51 |