- Transcript 'Harore.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S47.g14092.01.t
Possible name(s)
NCOA7; OXR1; TLDC2
Gene model
Location
S47 [330,160 / 339,775]
Amino acid sequence
Length: 711
>Harore.CG.MTP2014.S47.g14092.01.p
MWIGNPTFRQIGNISYTSYTPFTVRSKNLIFGVGMLAPESKQSSSLLRNHCQEIEEASHH
LATMEYEATARDTLQSIAVAFDTTTSRLMKLNRMTSSTSIFPGQKLHVPNCETAQSPHYD
TDESTSPKSERTFSGEFSFLAPLAPSTSTLRPFQDLVMVMPKPTETSDKDPVDESIFNET
NDGKSRNESQSDEQIKNENKNSGLSSDRERFVSSESTESEPFEEGFLKISVHYITDQKDT
VEGVILITPTALLFDPSTDDPIVMKEGCDKFGIMCPMHLICSVAMYNDTSQMSEKCDTSL
TEGFTDANDNRAKHNKLESFKQMTNSMSDEYLDSSEEQVSENKIEPSTNNEIDSDENSMY
KSTLCTALGNENMGPIPGTAKPAPRTGSETQIHQNALSSLNSNSMFLCIRARRRMVRTFS
QGEDSLEDETNSSDMRLPEYWFLVPRKRSDSIYAFFLQWSPENNLNHTGESLGFVMVSNN
SLSDEHGERTRSHTNSSIEFVDDFFDESFSFEKEWQIISFNEARKTFSALELANADSSLI
PELEKSSNYLTDETLLLLCKNLPNRCIGYSWFPVYTTNDHGTSLRTLYRNMAKLEGPVVL
IIQDSNDHIFGAHCSNPFHVSDHYYGSGESFLFQLSPEFEVYKWTGENSFFIKGDFDSLT
IGGGKGSFGLWLDADLYRGCSHECETYNNKILSSSEDFFIQGLEIWSFKDM
Nucleotide sequence
Length: 2,136
>Harore.CG.MTP2014.S47.g14092.01.t
ATGTGGATTGGGAACCCAACCTTCAGACAAATTGGGAATATTAGTTATACTTCATACACA
CCATTTACTGTACGATCAAAAAACTTGATTTTCGGTGTAGGCATGCTGGCACCAGAATCG
AAGCAGTCAAGTTCGCTGCTCCGTAATCACTGCCAAGAAATCGAAGAAGCTTCACATCAT
TTAGCCACAATGGAATATGAAGCAACCGCGAGAGACACTCTTCAAAGCATAGCTGTCGCT
TTTGACACCACGACTTCCAGGCTAATGAAATTGAATCGAATGACGTCCTCGACTTCCATA
TTCCCTGGACAAAAATTACATGTTCCTAACTGCGAAACTGCTCAGTCGCCGCATTATGAT
ACGGACGAGTCTACATCACCAAAATCTGAAAGGACTTTTTCTGGCGAATTTTCATTCTTG
GCACCGCTTGCACCTTCGACAAGCACGCTCAGACCTTTCCAAGACTTGGTCATGGTGATG
CCAAAACCCACAGAAACATCTGACAAAGATCCGGTTGATGAATCAATTTTCAACGAAACG
AATGATGGAAAATCAAGAAATGAATCGCAAAGTGATGAACAAATTAAAAATGAAAATAAA
AATAGTGGCCTTTCTTCAGATAGAGAACGATTCGTGTCGAGTGAATCCACGGAATCGGAA
CCTTTCGAAGAGGGTTTTCTCAAAATAAGTGTACATTACATCACAGATCAAAAGGACACT
GTCGAGGGAGTTATACTTATTACGCCAACGGCCTTGCTGTTCGACCCCAGCACAGACGAC
CCGATCGTGATGAAGGAAGGATGCGACAAATTCGGAATCATGTGTCCAATGCATTTGATC
TGCAGCGTCGCTATGTATAATGATACGAGTCAAATGTCTGAAAAGTGTGACACGTCCCTG
ACGGAAGGCTTCACGGACGCCAATGACAATCGGGCGAAACACAATAAACTAGAATCTTTT
AAACAAATGACTAATTCCATGTCGGACGAGTATCTCGACTCCTCTGAAGAACAGGTCTCG
GAAAACAAAATCGAGCCTTCGACTAATAACGAAATAGACTCAGACGAAAACTCCATGTAC
AAGAGCACGCTTTGTACGGCTCTTGGAAATGAAAATATGGGGCCAATTCCAGGAACCGCA
AAACCAGCACCAAGAACTGGATCAGAAACACAAATACATCAAAATGCACTATCATCACTA
AACAGTAACAGCATGTTCCTCTGCATTCGAGCACGCAGGCGCATGGTAAGAACATTTTCT
CAAGGAGAGGACTCCCTTGAAGATGAAACAAACTCTTCAGATATGAGACTTCCAGAATAT
TGGTTCTTGGTTCCAAGAAAAAGATCAGACAGCATTTATGCCTTTTTTCTGCAATGGTCT
CCTGAAAATAATCTCAACCACACAGGAGAATCACTCGGTTTTGTTATGGTTTCCAATAAT
TCGCTCTCAGATGAGCATGGGGAGCGGACAAGATCTCACACCAATTCTTCAATAGAGTTT
GTGGATGATTTCTTTGACGAGAGTTTCTCATTTGAGAAGGAATGGCAGATTATCAGCTTC
AATGAAGCGAGAAAGACTTTTTCCGCTCTTGAACTAGCCAATGCGGACAGTTCTCTCATT
CCTGAATTGGAAAAGTCAAGCAATTATCTCACAGATGAAACATTATTATTGCTTTGTAAA
AATCTTCCGAACCGATGTATTGGTTATTCGTGGTTCCCGGTATACACCACCAATGACCAC
GGCACAAGCTTACGTACGCTGTATCGTAATATGGCTAAGCTGGAAGGACCAGTTGTACTG
ATAATTCAAGACTCTAATGATCATATTTTTGGTGCGCATTGTTCTAATCCTTTTCATGTG
AGTGACCATTATTATGGCTCCGGGGAATCATTTTTATTCCAATTGAGTCCGGAGTTCGAA
GTGTACAAATGGACGGGAGAAAACAGTTTTTTCATCAAGGGAGACTTTGACTCGTTAACA
ATTGGTGGAGGAAAGGGGAGTTTCGGACTCTGGTTGGACGCAGATCTGTACCGGGGGTGC
AGCCACGAATGTGAAACATACAACAATAAAATTTTGTCAAGCTCGGAAGATTTTTTTATA
CAAGGTTTGGAAATTTGGTCTTTCAAAGATATGTGA
| Gene3D |
LysM_dom_sf (IPR036779) - T[54-120] 3.1E-11 |
| ProSiteProfiles |
LysM_dom (IPR018392) - T[64-108] 12.692 |
| SMART |
LysM_dom (IPR018392) - T[65-109] 9.6E-9 |
| CDD |
LysM_dom (IPR018392) - T[66-108] 1.93528E-8 |
| Pfam |
LysM_dom (IPR018392) - T[71-109] 1.4E-10 |
| SMART |
TLDc_dom (IPR006571) - T[547-709] 8.9E-59 |
| Pfam |
TLDc_dom (IPR006571) - T[574-708] 2.3E-38 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| OXR1_HUMAN | 41.791 % | 254 | 3.57E-73 |
| NCOA7_HUMAN | 43.934 % | 247 | 1.59E-70 |
| TLDC2_HUMAN | 47.305 % | 176 | 4.96E-51 |