Aniseed - Transcript Card

Transcript 'Harore.CG.MTP2014.S4...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S47.g12486.01.t

Possible name(s)

RDH11; RDH13

Gene model

Harore.CG.MTP2014.S47.g12486

Location

S47 [314,086 / 315,370]

Sequences

Amino acid sequence

Length: 167

>Harore.CG.MTP2014.S47.g12486.01.p
VQKLTGSSNIVLKSLDLTSLQSVRELAKDINGKEKRLDILINNAGIMKVPEGKTKDGFET
HFGVNHLGHFLLTNLLLEKIKENQSGRIITLSSLAHYFGKIHWDDLNVRKNYTGFSAYAQ
SKLMNAIFSVELSRRLRTTAENGGKHLQHEVKKTEEGFGKSVRNILG

Nucleotide sequence

Length: 504

>Harore.CG.MTP2014.S47.g12486.01.t
GTTCAAAAACTTACTGGATCGAGTAATATCGTTTTGAAAAGTCTTGACCTAACATCGTTG
CAATCGGTTAGGGAACTCGCTAAGGATATAAATGGCAAGGAAAAACGTTTGGACATTCTA
ATAAACAATGCAGGCATTATGAAGGTTCCAGAGGGAAAAACTAAGGATGGTTTCGAAACT
CATTTCGGAGTGAATCATTTGGGGCATTTTCTTTTAACAAATCTGTTACTTGAAAAGATA
AAGGAGAACCAGTCCGGGCGTATAATAACACTTTCATCACTTGCTCACTACTTCGGAAAA
ATACACTGGGATGACTTAAATGTAAGGAAAAATTATACCGGGTTCTCGGCCTATGCACAG
AGTAAACTTATGAATGCAATATTTTCCGTAGAGCTGAGTCGGCGTTTGAGAACGACTGCG
GAAAATGGTGGCAAACACTTGCAGCACGAAGTGAAGAAAACGGAAGAAGGCTTTGGGAAA
TCAGTGAGGAATATACTGGGCTGA

InterProScan

PRINTS	SDR_fam (IPR002347) - T[1-9] 1.4E-7 - T[35-46] 4.9E-6 - T[35-46] 1.4E-7 - T[80-96] 1.4E-7 - T[86-94] 4.9E-6 - T[118-137] 4.9E-6
Pfam	SDR_fam (IPR002347) - T[7-100] 5.8E-16
SUPERFAMILY	NAD(P)-bd_dom_sf (IPR036291) - T[8-136] 9.41E-31

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RDH11_HUMAN	51.825 %	132	3.49E-38
RDH13_HUMAN	58.73 %	129	8.18E-37
RDH14_HUMAN	49.265 %	126	6.44E-36