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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S4...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S47.g12310.01.t

Possible name(s)

RAB1A; RAB1B; RAB8B

Location

S47 [185,478 / 189,179]

Sequences

Amino acid sequence

Length: 168

>Harore.CG.MTP2014.S47.g12310.01.p
MNPEYDYLFKLLLIGDSGVGKSCLLLRFAWDTAGQERFRTITSSYYRGAHGIIVVYDVTD
QESFTNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEYADSLKVPFLETSA
KNATNVEQAFMTMAAEIKNRMGPATSPGQSSKVDITSKPVDQKSGGCC

Nucleotide sequence

Length: 1,150

>Harore.CG.MTP2014.S47.g12310.01.t
TTGATATTTCAGTTATTATTTAAAAATAAAATTTATATATACATAGAAAAATATATTAAT
TGCACATAAATTCTGAAGAAGTTGTTGTATCGATAGCAGGTTGTTACAAAAATGAATCCA
GAATATGACTATCTTTTCAAACTTCTTCTGATCGGCGACTCAGGGGTTGGAAAGTCATGC
CTATTGTTAAGATTTGCGTGGGACACGGCAGGTCAAGAAAGGTTTCGAACAATAACTTCC
AGTTATTACAGAGGTGCACACGGAATAATTGTTGTGTATGACGTTACTGACCAGGAATCT
TTCACCAATGTTAAGCAATGGCTTCAAGAAATCGATCGTTATGCAAGTGAGAACGTAAAC
AAGCTACTTGTTGGAAACAAGTGCGATTTAACAACCAAGAAAGTTGTTGATTACACTACT
GCAAAGGAATATGCAGACAGTTTAAAAGTTCCCTTTCTCGAAACGAGTGCGAAAAATGCG
ACCAACGTTGAGCAAGCCTTTATGACCATGGCTGCCGAGATTAAGAATAGAATGGGACCA
GCCACTTCACCAGGACAAAGCAGCAAGGTAGATATTACAAGCAAACCTGTTGATCAAAAA
TCCGGCGGATGTTGCTAAGAACATTTTTCACATACCATTTTTTCACGGAAGGTTAGCATT
TGACGATTTCATGTCATATGCTTTGAAAAGAATTAGCGCAAGTGACTACTCATTATGAAC
TAACTAAGCACCGTAGCATGGGCGTGTAACCTTGCTACGATTGCCTTTTGTGAAGCTTAT
AATCGTCTCTCTATATTAGGAACACTAGCTAAATTATTCTTTGGTCCGATTAGTGCTACG
TCGTCGTTAATCTACTATTGTGTTGTCATCATTGCTTCTACGGGCATTAATATGTATATT
TATCTGTTTTTAGAGACCTTGATTTTCCTAAATCGTAATCTTTACTATATGAGATATCTA
ACAATTGAGATAGAAACGAAAAGATATTATAAAACAAAGCTTTACGTGATTTGTAGTAGG
CCCTATTTAAATGTATATCGTCATCAGGAAGTGAGTTCACTGTTCTTCGGCTTGTGTCCG
TGTCTACTCGACAGAATTTAGTCACGTATCGGTGTTGATTTTCATTCATTTTACGAACCT
ACATTTGTCA

InterProScan

SUPERFAMILY
P-loop_NTPase (IPR027417) - T[4-145] 3.86E-49
TIGRFAM
Small_GTP-bd_dom (IPR005225) - T[30-133] 8.7E-19
Pfam
Small_GTPase (IPR001806) - T[30-138] 3.6E-42

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RAB1A_HUMAN 73.762 % 296 5.71E-104
RAB1B_HUMAN 72.637 % 284 2.33E-99
RAB1C_HUMAN 69.154 % 267 1.44E-92