- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g51464.01.t
Possible name(s)
NWD1; PAFAH1B1; PRPF4
Gene model
Location
chrUn [316,432,519 / 316,439,520]
Amino acid sequence
Length: 1,016
>Boschl.CG.Botznik2013.chrUn.g51464.01.p
MRRLALKPDLSAATERCRSTFEINAYWYQLIEDIRDLVMPCFADGTVTLKWQHAAYWQAI
YAMYMSTPEDVQFYHGIMSSYFSNSPEPCRCGKTHDCHQPLYWSTHNVTPTSKTIVNRRR
LSESIYHSTQCKDLEKIKFEMLFDYEWLQAKLNTTSIEFLLDEIHQVLLLKCDDLDIRLL
LESLFLSYEILNNDPSQLPSQLIGRLNDIIEKDVPLAPEDPRKYPHARVLLYHIRRSKSQ
YLMPTTTCLIAGSQIIYDPLHGHEDEITAIACCTDGQRIATASKDSTIKIWDIIERRVIR
TIRGVGDDITDLCLCMGNYHITSTHENNHINIWNIQKGVNVMSIQEYHSSEEILCTVAMD
GQLLAVASKFSATVRVWDLDKMDFHKTISILPENGKCPALEMARNCHATNILIGYKNFPE
AIVVNVRRGKVARSLLCESGRVTQVEVSREYYIVGCLERKMEMHEIQKYYLFDTINYGLV
RALKACIEDNVTHVFVNRLGSHLIGISTNAHGAEEVILWNMETDGHRHMVQSPKKMFRGV
CTDLQYCMTVAEREWAVRIHNLAAQITKHDHSRTQVRKKVDGIARLYNMPKHDKYVVAQG
TGGSPITIWNVARSKCRGKAVIIERGLLDKNDIVVVKDVMVVILSDRGMVSLKHQVFETI
YVYNLLLRRYERKLNPVRVTICPPNHYHLIDEDRLMATSHDRTYLTIWSIVTGEALHEIR
TSFPKYQIEEKPKRSTRRRRGNRPKTSETKVRKIKTSWKTCAVSREEQQKAIYDMIISAD
DSTLVCSYYARHMIVFDLRSGKHVHTLTDQNSTLQLNKAVINSNGSFLLCNNFDSVTHTS
YLTLWNLSDGNVARRRQDEPKVCSVAMTDDGSRIAFVTEDKFIKIWDPFKRQSHRSIAGY
QRVCVQNQEGDDSQPTTIFITMEGKRAILFANSISVWDLDGESLLMVFEPDYKFACCTVA
LHGQVIVIGRRDSPAITTLRLPEEENAKSHHHKSRFGEDESSDSDSSLTESEDEEL
Nucleotide sequence
Length: 3,051
>Boschl.CG.Botznik2013.chrUn.g51464.01.t
GATGCGACGCCTTGCCCTGAAACCTGATCTAAGCGCTGCCACGGAAAGATGCCGGTCTAC
ATTCGAAATTAATGCGTATTGGTACCAACTCATTGAAGATATACGCGATTTGGTAATGCC
GTGCTTCGCAGACGGAACGGTGACACTCAAGTGGCAGCACGCTGCATACTGGCAAGCCAT
ATATGCCAGGTATATGTCCACACCAGAAGATGTACAATTTTATCATGGAATCATGAGCTC
GTATTTCTCGAATAGTCCGGAGCCGTGTCGATGCGGAAAGACACATGACTGTCATCAACC
CCTTTACTGGTCAACTCATAACGTCGCCCCAACTTCAAAAACGATAGTAAATCGCAGGCG
ATTGAGCGAGTCAATCTATCATTCAACACAATGCAAGGACCTGGAAAAGATCAAATTTGA
GATGTTATTTGATTACGAGTGGCTCCAAGCGAAATTGAATACAACATCAATCGAGTTTCT
TCTTGACGAGATTCATCAAGTCCTCTTACTGAAATGCGATGATCTGGACATTCGCCTTCT
ACTGGAGTCGTTATTTCTCTCGTACGAAATATTAAACAACGACCCCAGTCAACTACCATC
GCAACTGATTGGTCGACTGAATGATATCATCGAGAAAGACGTGCCCTTGGCGCCAGAGGA
TCCGAGGAAGTACCCACACGCAAGGGTCCTCCTTTATCACATTCGTCGATCAAAATCACA
GTATCTTATGCCAACCACCACCTGCCTAATAGCGGGAAGTCAGATCATCTACGACCCATT
GCATGGGCACGAAGATGAAATAACTGCTATCGCATGTTGCACGGACGGGCAACGAATCGC
GACAGCTTCGAAGGATTCCACAATAAAGATATGGGACATCATTGAACGGCGTGTTATAAG
AACAATCCGAGGCGTTGGGGATGATATTACTGACCTCTGCCTGTGCATGGGGAACTACCA
CATCACTTCCACTCATGAAAACAATCAGATAAATATTTGGAACATACAAAAGGGAGTTAA
TGTAATGTCCATACAAGAATACCACTCATCTGAGGAAATACTTTGCACGGTAGCTATGGA
TGGTCAACTTCTCGCGGTGGCCTCCAAATTCTCAGCAACGGTCCGAGTTTGGGATCTTGA
CAGAATGGATTTCCACAAAACCATAAGCATTCTACCCGAAAATGGGAAGTGCCCGGCTTT
GGAAATGGCCCGAAATTGTCACGCGACGAACATACTAATCGGGTACAAAAACTTTCCAGA
AGCAATCGTGGTCAATGTGAGAAGAGGGAAGGTTGCGCGGAGTCTTCTTTGCGAGAGCGG
AAGGGTAACCCAAGTAGAGGTTTCCAGAGAATACTACATTGTCGGCTGCCTTGAAAGGAA
AATGGAGATGCACGAGATCCAGAAATACTATCTATTCGATACCATCAATTACGGATTGGT
CCGTGCGCTCAAGGCCTGTATCGAAGATAAGGTCACCCATGTCTTTGTGAATCGACTGGG
CTCGCATCTGATTGGAATAAGCACAAACGCTCACGGGGCGGAAGAAGTGATATTATGGAA
TATGGAAACCGATGGACATCGTCACATGGTTCAAAGTCCAAAGAAGATGTTTAGAGGCGT
GTGCACGGACTTGCAATACTGCATGACAGTGGCAGAAAGGGAGTGGGCCGTCCGAATCCA
TAATCTTGCCGCCCAAATCACCAAGCATGACCACAGTCGGACTCAGGTTCGAAAGAAAGT
CGATGGAATCGCGAGATTGTACAACATGCCAAAACACGATAAGTACGTCGTCGCGCAAGG
CACCGGGGGAAGTCCGATCACGATTTGGAATGTGGCGAGAAGCAAATGTCGCGGAAAAGC
CGTCATCATTGAAAGAGGACTTTTGGATAAAAACGACATTGTGGTTGTGAAGGATGTCAT
GGTTGTTATTCTTTCCGACCGTGGGATGGTGTCTTTAAAACATCAGGTGTTCGAAACGAT
ATACGTATACAATCTATTGCTTCGGAGATACGAACGAAAACTTAACCCAGTCCGTGTAAC
TATCTGCCCACCAAATCACTACCACTTAATTGACGAGGACAGACTAATGGCAACTTCACA
CGACCGAACATACTTGACCATATGGAGCATTGTTACGGGAGAGGCCCTGCACGAAATCCG
TACTTCGTTCCCAAAGTATCAGATTGAAGAAAAACCAAAAAGATCAACTAGACGCCGAAG
AGGTAACAGACCGAAGACTTCCGAAACTAAAGTTCGGAAGATCAAAACCAGCTGGAAGAC
ATGCGCAGTATCCAGAGAGGAGCAGCAGAAAGCAATTTATGACATGATCATCAGTGCGGA
CGACAGCACGCTTGTGTGCTCGTATTACGCAAGGCATATGATCGTATTTGATCTGAGATC
TGGAAAGCACGTTCACACTCTTACCGATCAGAACTCAACACTTCAATTGAATAAGGCAGT
CATCAACTCGAACGGCTCGTTTCTCCTGTGCAACAATTTCGACAGCGTCACGCACACAAG
CTATTTGACATTGTGGAACTTGAGCGACGGAAATGTAGCTCGGAGGAGGCAGGACGAACC
GAAAGTCTGTTCAGTCGCCATGACGGACGACGGGTCGCGAATCGCGTTTGTGACTGAGGA
CAAATTCATCAAGATTTGGGACCCATTCAGACGTCAGAGTCATAGAAGTATCGCCGGATA
TCAACGAGTCTGTGTGCAGAATCAGGAAGGAGATGACTCCCAACCGACCACCATCTTCAT
TACAATGGAAGGAAAACGAGCTATATTGTTCGCGAACTCCATATCTGTGTGGGACTTGGA
TGGGGAGTCGCTATTAATGGTGTTCGAACCAGATTACAAGTTCGCTTGCTGTACCGTTGC
CTTGCACGGGCAGGTTATAGTCATTGGACGCAGAGACTCACCTGCAATCACCACTTTGCG
CTTACCGGAAGAAGAGAACGCAAAATCCCATCACCACAAAAGTCGCTTCGGCGAAGACGA
GTCATCCGACAGCGACAGTTCACTCACTGAATCAGAAGATGAGGAACTGTG
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[241-396] 6.0E-25 - T[410-733] 1.9E-6 - T[746-980] 7.2E-17 |
| SMART |
WD40_repeat (IPR001680) - T[253-292] 2.4E-8 - T[295-334] 0.49 - T[340-378] 23.0 - T[476-520] 440.0 - T[757-797] 54.0 - T[800-846] 280.0 - T[848-887] 1.0 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[260-387] 19.617 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[260-301] 15.621 - T[855-887] 8.503 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[260-396] 4.88E-40 - T[755-893] 4.88E-40 |
| Pfam |
WD40_repeat (IPR001680) - T[260-292] 1.0E-5 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[279-293] . - T[321-335] . |
| SUPERFAMILY |
Quinoprotein_ADH-like_supfam (IPR011047) - T[421-538] 1.33E-10 - T[579-623] 1.33E-10 - T[690-721] 1.33E-10 - T[768-834] 1.33E-10 |
| Protein Name | Identity | Bit Score | e-value |
|---|