- Transcript 'Harore.CG.MTP2014.S7...' >
- Transcript 'Harore.CG.MTP2014.S4...' >
- Transcript 'Harore.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S474.g04234.01.t
Possible name(s)
SOX14; SOX2; SOX21
Gene model
Location
S474 [37,153 / 39,190]
Amino acid sequence
Length: 450
>Harore.CG.MTP2014.S474.g04234.01.p
MLAVDSQAGWMQIPYPPGTGVPVVHTTSHLPPPPPISGDGSIMQTDLKPIYSTSSQISPI
NSQMHHMSGIQQQVVGSVSAGSKSSQEQRVKRPMNAFMVCSCFITSVDTIPTIPHFHKVW
SRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEGDKRPFIDEAKRLRALHMKEHPDYKYR
PRRKTKMMKKDKYGSTILPSSTSSAVATSIGRSPLPNSLDYQHLNGYGPYSTMIPQDPYS
TQGYGVPGNQSAVGHLTQRYDMPMYYPSYTAAPTIPTMGNPGVSHLGGYHGPPTSYSVGP
PTLPGTPPYSNVLHQPHVPTVKSPDTSPGGIGHQTPSCHSGSSPGQTPIAGQPQCPPQAQ
AGQIQSMISMYLPHSEHAGVTPVPSSSPAMDNSRLASMQPAHYSIPLTSGVHIPHMHTMS
NIRDSREVELNTWDSIIAAEFLCIICIVCV
Nucleotide sequence
Length: 1,497
>Harore.CG.MTP2014.S474.g04234.01.t
ATGTCACGGGCCCAAGGTTCAGTGTTTAAGAGAGAGAGAAATAGAGAGGAAAGTGGCACT
CATAAGCGAACGACATCAAGACGTTCTTCGCCAGTTGCAATTTAATTAAAATTTCCTGCA
AAGCAAAAGACTTTTGAAATATATATGTTAGCTGTCGATTCACAAGCCGGTTGGATGCAG
ATTCCATACCCACCAGGAACTGGGGTCCCAGTTGTTCATACTACTTCCCATTTACCACCC
CCACCTCCGATTTCCGGAGATGGGTCCATCATGCAAACGGATCTGAAGCCGATATATTCA
ACTTCAAGCCAAATATCACCGATAAACAGCCAAATGCATCACATGTCAGGGATACAACAG
CAGGTTGTTGGTTCGGTATCGGCGGGCAGCAAATCCTCTCAGGAACAGAGGGTTAAGCGG
CCAATGAATGCGTTTATGGTATGTTCATGTTTTATTACTTCTGTTGACACTATTCCGACC
ATTCCTCATTTTCACAAGGTTTGGTCACGTGGTCAACGGAGAAAAATGGCGCAAGAAAAT
CCTAAGATGCATAATTCAGAAATATCAAAGCGACTAGGTGCTGAATGGAAATTACTTTCC
GAGGGAGACAAAAGACCGTTCATCGACGAAGCAAAACGTTTGCGAGCATTGCATATGAAA
GAGCACCCAGATTATAAATACAGACCAAGAAGAAAGACAAAAATGATGAAAAAAGATAAG
TACGGAAGTACAATACTGCCATCCTCTACGTCTTCAGCTGTCGCAACTTCCATCGGTAGA
TCACCCCTGCCAAATAGTCTTGACTATCAGCACTTAAATGGATATGGCCCGTATTCAACA
ATGATTCCTCAAGATCCGTATTCAACTCAAGGTTATGGTGTTCCTGGAAACCAAAGTGCC
GTTGGTCATCTTACTCAAAGATACGATATGCCGATGTATTATCCATCTTACACAGCAGCA
CCGACCATTCCAACTATGGGAAATCCCGGAGTTTCTCATTTAGGCGGATATCATGGTCCT
CCAACTTCTTACTCCGTTGGACCACCAACATTACCTGGAACACCACCGTATTCCAACGTC
TTGCACCAACCCCACGTACCTACTGTAAAATCTCCAGATACGAGTCCCGGCGGTATTGGA
CATCAAACTCCAAGTTGCCATTCTGGATCGAGTCCCGGTCAAACACCAATTGCCGGACAA
CCACAATGTCCTCCACAAGCGCAAGCCGGACAAATACAAAGCATGATAAGTATGTACCTA
CCACATAGTGAGCATGCTGGAGTAACCCCTGTTCCATCTAGTAGTCCAGCAATGGATAAT
TCTAGATTGGCGTCCATGCAACCTGCGCACTATTCCATTCCACTTACCAGTGGTGTACAT
ATTCCACATATGCATACAATGTCAAATATTCGGGATTCAAGGGAAGTGGAGTTAAATACT
TGGGATTCAATTATTGCAGCTGAGTTTCTTTGTATCATTTGCATAGTTTGTGTGTAA
| SUPERFAMILY |
HMG_box_dom_sf (IPR036910) - T[84-182] 3.59E-21 |
| Gene3D |
HMG_box_dom_sf (IPR036910) - T[87-185] 5.1E-29 |
| SMART |
HMG_box_dom (IPR009071) - T[89-179] 4.9E-19 |
| ProSiteProfiles |
HMG_box_dom (IPR009071) - T[119-178] 17.634 |
| Pfam |
HMG_box_dom (IPR009071) - T[119-178] 6.3E-20 |
| Pfam |
SOX_fam (IPR022097) - T[179-242] 1.8E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SOX2_HUMAN | 42.475 % | 172 | 4.37E-50 |
| SOX21_HUMAN | 70.755 % | 151 | 1.54E-42 |
| SOX14_HUMAN | 71.429 % | 152 | 1.31E-43 |